Ppec039605.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070082.1:26754023-26757244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0033 0.58 12.1 0.2 2 23 87 109 86 109 0.96 2 11 0.011 2 10.4 4.6 2 23 197 219 197 219 0.91 3 11 6.3 1.1e+03 1.8 7.6 3 23 397 418 396 418 0.95 4 11 0.25 43 6.2 0.1 2 20 471 489 470 493 0.84 5 11 0.0033 0.57 12.1 0.6 2 23 557 579 556 579 0.95 6 11 5.7 1e+03 1.9 0.4 2 23 604 626 603 626 0.91 7 11 0.0082 1.4 10.9 3.6 2 23 671 693 670 693 0.96 8 11 0.12 21 7.2 3.7 3 23 708 729 706 729 0.92 9 11 0.00023 0.041 15.7 0.7 2 23 779 801 779 801 0.95 10 11 0.2 35 6.5 0.9 1 23 874 896 874 896 0.97 11 11 0.002 0.34 12.8 1.7 2 23 909 931 909 931 0.97
Sequence Information
- Coding Sequence
- ATGACGACATCCGCCACTTTACCTTCCACGACAGGACCGGTACATGCTGGCGGCTTCTCTACGATTTCCGAAGACACCGCTGCCGACGATCCCGTCTTCGAGACACCGCGACCTATGAAACGATGCTTAATCGCCCCGCTCACAGACTCCTGCAAAAAGCGCCGGAAACAGGCCACTCCGGTTCGTATATCAGCTGCTGATTCAGATTTAGTTCCTTCAGAAGGTAAGCTGTCCATTGCATCTCCTGAACCCGAATTGCAGTGTCCCTTGTGCCAACTCACCTTCAACGCAGCCGATAGACTTCAAAACCACCTAACCACGGAACATGCAAATGTTCATTGTAAAAAGGAACCAGAGGATGCTCCAACAGCTCCAAATTACGAACGATGCGAAACTCCAATCGAGATGCCTGCTTCCAGAAGCGAATTACCCTGGATTAacgatttacaaaataaagaatgGATTAACCCCAACTTGCACGGAGTGCAGTTTTCACCGGCCACTTCTTTATTTATGACCCTCCCGCCGTTTACACAGCCCGATAACATTCCAACAAGGCAACCTGTTAGAATTTTTAATCCAGACGCGTACTGTGACTTGTGTAATAAAGAATTTTGCAATAAGTACTTTTTAAAAACTCACAAAGCTAATAAACACGGAATTTACTCGGACCCACCGGTTACCGAAACATTAGGTACAACAGTTAGTATTCCTTCGTACGCGTCAAATATCAAAATACCGGTTTCATCTAATTCAAATAATACGGAAATTGCGTCCACAAAAACCGATCCGAAATTACAATCTAACCCGGCAAACCCATTTAGCGAACTCTTTCCTAGCAATCCAACcttattttcaaacaaattatttccaaaaatctcAAAACCCATTCAACCTATGTTCGAATCGGAAGTATCTGAAAATGCCACGACTCCCGACTTTAATACGTCATCCACTTCTTTATGTAACGGACAGACAGATCGCACCGCACTTAATGAAGACACAATGGCCGAAGAAACTTCGAGCCCCAAAGCCATTCAACATGACGTTTCgttgttaaaaaatgaatttaattttgaCGAGGGCACATATTTCACTTCGCCAAGTAAAATGTCACCAGGTCAACAGTCACGCgaaattgatttaaatcgtCTTAGAAGAATAGGTGTCATGAATCCGAAAGCGTTTTGTGAGATATGTTGTAAAGAAtactgtaataaatattttttacgaaCGCACAAAATGAAACGTCACGGAATTTATATACCAGACGACAGTAAAGATGGCAAGGAAATGAAAATGGAATCAAATTGGTCACATAATATGCAAACTAGCCCTTTAAACCTAATTATGGCCGAACAAACCAATTCAAATACTTCCGAACGTAAaacaaattcaccggcagatATTTCCTGTGACACGTGCggtatcaaatttcaaaacgcGAGTCTGGCTCAACTCCACAATGTAAGCGTTCATTCACGTTTACCTCAAGGTAATCACGATACGTCCGAATTATTTCCAGAAGATGTAGCAAGATGTGCACCAGAATATCAAAATACGGGAGATAAAAGTGTTAATTCCGCAGATGCTATTAGTGAAGATTTACAGAAGTTGCAAACGATGATTTTGCAGCTAAATGATATAGACGTAAATAGGACCGCGAGCACTTGCAACGTGTGCAGCAAAGAATTAGAGAATCGATACTATTTACATGCACATATGATGGCGGAGCACGGTTTGTTGGTAGAAGATGGTGCGGATCCAGAGAAAAACGTCGAGGAAGAAAATATCGTTAACAATAATTCCTCGTGCGATTTGTGCAGTAAAGAAATGCAAAGTGTAGATGACATGAAGAAACATTTATTGGAGTTCCATCCGAATCAGCATATAAGTGATATAAAGGAAGAAGCGTTTATAAATGCCGAGAAGGGACCAATGAGAGGAAGTTCGGTCACTGGTTCATTTCCCGACCGGCGAAGTTCCATGAGTCTCACGCCCAGTAGCAGCTATTGTGAAATTTGCAACAAAGAACTCTGCAATAAGTATTTCATGAAAACCCACATGCAAAGAATGCACggtattgaaattgaaaatggtGCTCAAATCGGAGGCGTTATATGCGATATATGTAACAAGGAACTTTGTAGCAAATACTTTCTTCGTGTGCATAAACACAACACACACGGTATCGTTGAATATGGTTCCAGTCTGTTGCAACCTCGAAAAACCGACCCGGAAACCACTCCATTGCTTCCTACGGAACAAGATTCCGCACTAAAACCGGGAGATCTTGCTGATCTTAGTCATCGTTACTTTACACATTTTACTGAAGTGTGCACAATTTGTAGTCGTCGTTTTCGTAGCACTAAGTGGCTAAAAGCGCATTTATTAAGTGACCATGGACAAACCGGTGCAGAAAAGTGGGCAGAATTAGAGCAACAGCTTCAACAATCACTTGGTCAAAATTCGAAATCTACAAGTGTAAGAACTCCACAAAGTGATCGCGCAAGTCCGACGTTAAAAataccaaatggtaatcaagACGGAACATCAAAAGTGGGGTTACAAAATGTTTTATCGACAATTTTTGGGACGGACGAAACAGCTCCTAAAAATTATCATTGTTCCTATTGTCCCTTTTCTACACCCGTTcttccttttttatttgtacacgAACGATCACATTCTATGCAACCAAGTGAAGGAGACACTACTTCGCCTAAATGTCCAGTTTGTACTCAAAATTTTGCACAGACAGAAATGTTGCAGCACCATTTGTTTACTCAGCATCCGTTTTTTCCATTGCCACCTTTTTTTAATGGTAACGCCGAGTCGCACCAAGAAAATCAAACGCCCAAAGATAACTTCGATTGTCTTGAAGAGGATTCAAAAACGGACGAAGCGGAGATTTCCCCCAATGAGTCCAGTAAGCAGCTGTGTAGTAAAAGCAAGAAAGTAAAACGAAAATTAAATCGCTTAGAATTATCACCCGAGGTGAATCAATCGCTGAAAGATGTAGCGAAAAGATCTCAACTACCCGCGACGTATGCACTACCTCAAATTGGAGAACAAACAGGCACATCGGGATACGTGATGCAGGCATTTCTTTTAGATGAATCGGCGGTCGAGCGTAGGTTTGTACCGTCCGTAGTTTTTCTGCCGGTTTTACAGAAGCAATCGGCACCAGTAACCGTGACTTTCACCCTTACCCCAGCTTAA
- Protein Sequence
- MTTSATLPSTTGPVHAGGFSTISEDTAADDPVFETPRPMKRCLIAPLTDSCKKRRKQATPVRISAADSDLVPSEGKLSIASPEPELQCPLCQLTFNAADRLQNHLTTEHANVHCKKEPEDAPTAPNYERCETPIEMPASRSELPWINDLQNKEWINPNLHGVQFSPATSLFMTLPPFTQPDNIPTRQPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYSDPPVTETLGTTVSIPSYASNIKIPVSSNSNNTEIASTKTDPKLQSNPANPFSELFPSNPTLFSNKLFPKISKPIQPMFESEVSENATTPDFNTSSTSLCNGQTDRTALNEDTMAEETSSPKAIQHDVSLLKNEFNFDEGTYFTSPSKMSPGQQSREIDLNRLRRIGVMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYIPDDSKDGKEMKMESNWSHNMQTSPLNLIMAEQTNSNTSERKTNSPADISCDTCGIKFQNASLAQLHNVSVHSRLPQGNHDTSELFPEDVARCAPEYQNTGDKSVNSADAISEDLQKLQTMILQLNDIDVNRTASTCNVCSKELENRYYLHAHMMAEHGLLVEDGADPEKNVEEENIVNNNSSCDLCSKEMQSVDDMKKHLLEFHPNQHISDIKEEAFINAEKGPMRGSSVTGSFPDRRSSMSLTPSSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKHNTHGIVEYGSSLLQPRKTDPETTPLLPTEQDSALKPGDLADLSHRYFTHFTEVCTICSRRFRSTKWLKAHLLSDHGQTGAEKWAELEQQLQQSLGQNSKSTSVRTPQSDRASPTLKIPNGNQDGTSKVGLQNVLSTIFGTDETAPKNYHCSYCPFSTPVLPFLFVHERSHSMQPSEGDTTSPKCPVCTQNFAQTEMLQHHLFTQHPFFPLPPFFNGNAESHQENQTPKDNFDCLEEDSKTDEAEISPNESSKQLCSKSKKVKRKLNRLELSPEVNQSLKDVAKRSQLPATYALPQIGEQTGTSGYVMQAFLLDESAVERRFVPSVVFLPVLQKQSAPVTVTFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400034;
- 90% Identity
- -
- 80% Identity
- -