Ppec020561.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070077.1:942020-943957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.6 9.7e+02 1.9 3.1 1 21 146 166 146 167 0.90 2 16 0.00018 0.032 16.1 3.0 1 21 174 194 174 195 0.96 3 16 0.0011 0.19 13.7 2.6 1 23 228 251 228 251 0.98 4 16 0.0011 0.2 13.6 2.5 1 23 284 306 284 306 0.98 5 16 0.00066 0.12 14.3 2.7 2 23 313 334 312 335 0.94 6 16 3 5.2e+02 2.8 5.1 1 23 340 362 340 362 0.96 7 16 0.0096 1.7 10.6 3.1 2 23 369 390 368 391 0.95 8 16 0.01 1.8 10.6 4.5 1 23 396 419 396 420 0.96 9 16 0.37 66 5.6 5.3 1 23 425 447 425 448 0.96 10 16 0.0011 0.18 13.7 0.9 1 23 453 475 453 476 0.96 11 16 0.018 3.2 9.7 3.1 1 23 481 504 481 504 0.96 12 16 0.028 4.9 9.2 1.1 1 23 509 532 509 532 0.94 13 16 0.082 14 7.7 3.8 2 23 538 560 537 560 0.93 14 16 0.01 1.8 10.6 0.9 1 23 565 588 565 588 0.97 15 16 0.0031 0.54 12.2 0.6 3 23 595 616 593 616 0.96 16 16 0.41 71 5.5 1.9 1 23 621 644 621 644 0.92
Sequence Information
- Coding Sequence
- ATGCCATTGTCAACAGAACATAATATGATGAACCACAAAATCAAAGATGAACCACAGGTAGAAGTAAGAGAAGAAAATGTAGCTTGTGAAGAAACCATTATCCAAGTTGAACCAAAGGAAGAGGAAGAACTAAATTCCTTCCTTATAACACAATATTTCCAAGTAAATGGTCAACATGTTACACAATTACAATGTACATCTAATGATTTGAATACTAACTCTAGTGATCTACATTCTGTGTTACCTTCTCATGGCAAAACtggtagaattaaaaaaagtaattccaaaaatctaaaatctaaaatacaagcTAGAAGCTTAACTGCATCATCTTCTAAAAAGGTAAAGAATGGATTACAAGAATCGAAGCGTAACTTACAGGATAggactaaaaaatttaaatgtcctCGGCAAAAACATGATGGTTCAAAAAGGTATCGATGTTTTCACTGTTCTTATGTAACGAAGTGTAGGACAAATGTAGTTCGTCACGTGAAAGCATGTCGAGTTTCGAAGGAGTATAAATGTCAACATTGCAATTTTACCACAAGATCGaaaattaatttatcaaaaCATATGAATTCTGGTGTAAAAGAGTTTAAGTGTGACCAATGCTGTCACGGCACACAAACGAGAGGTAGTTTATTGAGACATGTGAAAGAGCAccatggttcagaagaatttaaatgtaatcagtgcaatTTTACCTCAAAATCACGACGATACTTAGCAACACATGTGAGAGTGTATCATGGTTCAGAAAAGTTGAAATGTCAAGAGTGCagttttgttacaaaatggAGAAATTGTTTACTCGGACATTTGAAAGTACATCATGGTTTAGTGGAGTTTAAATGTGATcagtgcagttatgtcacatATACGAAAGATTGTTTATTGAGTCATATGGAAGTGCATCCTAATTCAGAACCGCTTAAATGTCAAGAATGCAACTTTAGCACCAAAATGAGAGATAGTTTATTGAGACATATGTCGGTGCATCATGGTTTAAAAGCGTTTAAATGTAATCATTGTAGTTTTGCCACAAGATGGAAATACTGTTTATTGGAACATGAGAAAGTGCATCGTAGTTCAGAAGACCTTAAGTGTGATCAGTGCAGTTACACTACAAAAGGAAAACTTTATTTATCGAGGCATATAAAAATGCATCATGGTTCAGAACAGTTTACGTGTGACCAGTGTAACTTTACCACAAAGTTGAAACGATATTTACTGAAACATATGAAAGCAAATCATCATAGTTCAGTGCAATACAAATGTGATCAATGCACTTATGCCACAAAATGGAACAAATGTTTATTGAGACACATAAAATTACATCACGAATCAGCAGAGTTCAAGTGTGATCAGTGCAATTATGCGATAAACTCAAAAGCATCTTTATCGATTCATGTGAAAgtacatcatggttcagaacAGTTTAAATGTCAACAATGCAACTTTACTACAAAATTGGAACGATATTTACGAAGACATGTAAAATTGTCGCACGGTTCAGTAGACTTTAAATGTCAACAGTGCACTTATGTCGCAAAATCTAAATTCTCTTTATCATTACATGTGCAAGGACAGCATAGTTCTGAGGAGCTTAAATGTCAGCACTGTACTTTTACTACAAAAACGAGAAATAGTTTATTACTACATACAAATGCGCGTCATGGTTCAGTAGAGTTTAAATGTAAACAGTGCAATTATTCCACAAAATGGAGAGCCGCTTTATCGAGACATGTCAATGTGCAGCATGGTTCAGAAGAGATTAATTGTCCTCATtgtagttttgtcacaaaaggaaaaaatagtTTATCGGCCCATATAAAAGTTCTtcatggttcagaagagtttAAATGTCCTCATTGTAGTTTTGTTATAAAATGCGAAGACTCATTATTAGAACATATGATAGAGAATCATACATAG
- Protein Sequence
- MPLSTEHNMMNHKIKDEPQVEVREENVACEETIIQVEPKEEEELNSFLITQYFQVNGQHVTQLQCTSNDLNTNSSDLHSVLPSHGKTGRIKKSNSKNLKSKIQARSLTASSSKKVKNGLQESKRNLQDRTKKFKCPRQKHDGSKRYRCFHCSYVTKCRTNVVRHVKACRVSKEYKCQHCNFTTRSKINLSKHMNSGVKEFKCDQCCHGTQTRGSLLRHVKEHHGSEEFKCNQCNFTSKSRRYLATHVRVYHGSEKLKCQECSFVTKWRNCLLGHLKVHHGLVEFKCDQCSYVTYTKDCLLSHMEVHPNSEPLKCQECNFSTKMRDSLLRHMSVHHGLKAFKCNHCSFATRWKYCLLEHEKVHRSSEDLKCDQCSYTTKGKLYLSRHIKMHHGSEQFTCDQCNFTTKLKRYLLKHMKANHHSSVQYKCDQCTYATKWNKCLLRHIKLHHESAEFKCDQCNYAINSKASLSIHVKVHHGSEQFKCQQCNFTTKLERYLRRHVKLSHGSVDFKCQQCTYVAKSKFSLSLHVQGQHSSEELKCQHCTFTTKTRNSLLLHTNARHGSVEFKCKQCNYSTKWRAALSRHVNVQHGSEEINCPHCSFVTKGKNSLSAHIKVLHGSEEFKCPHCSFVIKCEDSLLEHMIENHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -