Ppec020385.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070076.1:53841350-53843092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.012 2 10.4 0.9 2 23 99 120 98 120 0.96 2 17 0.0012 0.2 13.5 4.2 2 23 127 148 126 149 0.95 3 17 2.9 5.2e+02 2.8 6.5 1 21 155 175 155 176 0.96 4 17 0.013 2.2 10.3 1.0 2 23 183 204 182 204 0.96 5 17 9.3 1.6e+03 1.2 6.1 1 23 210 232 210 232 0.90 6 17 0.0053 0.93 11.4 3.2 1 23 239 261 239 261 0.99 7 17 0.003 0.52 12.2 2.8 2 23 268 289 267 290 0.94 8 17 0.0053 0.93 11.4 0.3 1 23 295 317 295 317 0.98 9 17 0.054 9.5 8.3 3.0 1 23 324 346 324 346 0.96 10 17 0.16 28 6.8 5.7 1 23 352 374 352 374 0.98 11 17 0.005 0.88 11.5 3.0 1 23 379 401 379 401 0.98 12 17 0.00097 0.17 13.8 2.7 1 23 407 429 407 429 0.98 13 17 0.74 1.3e+02 4.7 4.4 1 23 437 460 437 460 0.95 14 17 0.0015 0.27 13.1 2.7 1 23 465 487 465 487 0.98 15 17 0.076 13 7.8 2.1 2 23 493 515 493 515 0.96 16 17 0.032 5.5 9.0 0.6 1 23 521 543 521 543 0.97 17 17 0.026 4.6 9.3 1.5 1 23 550 572 550 572 0.94
Sequence Information
- Coding Sequence
- ATGAGTGCAGAAATTAAGATGGAATCAGAACATGATGGATGTGTTTACATTTACGAAACAGTTAGTAAGAAAATTAAATCTGAATCAAAGGACGAATTGAATTCCATCGTATCAGCTACAGTAGATGATAATTTGGATTCCCTCAAAGTTGAAAATGGAGTCATTAAAAGCGAACGTGAAGATTACGAAGTAATAGATGAAAAGCCTAATGTCACCTGTGTTTATTTTACCGAACCTAATCGAGAAGAAATTGAAGCTCCTCGTCAAGAAGAAATGACACCCgcgaatttattaaaatgtacacaGTGTTCGTATGTTACAATGATGAAATGGTCGTTAAAGAGGCAccttttattacataataagtCGAAAGAACTGAAATGTAAGCAGTGTAAGTATGTAACATCGGAAGAACGGTATTTAAAATCACATATGAAAACACACCATTCCTCGCGCGtcgaatttaaatgtaaacattgtttatttacaacaaaGCAGAGAAACGTTTTTAAGCAACACACTCGACATATTCCCGGAAAACCGTTGAAATGCGATCAATGCTCGTTTACGACAAAGTATAGGCAAAGTTTATGGAATCACGCTCAAATACATAAAACTCCGCAAGTATTCAAATGTGGTAAGTGCGAGTATCGCTCGTTTTCCAGACAGTATTACAACTGTCACGTTAGGACTCACGATCCTTCCAGTATTGCATATACGTGCGACGTTTGTTACTTTACAACAAAAAACAGAAGGTCATTTTTAAGTCACCGTAGAGTACACAGTGTCACAAAACCGTTAAAATGTGATCGATGTTCGTTCGTAACAAAGTATAGAGAGAATTTAAATAGACATCGGATAATACATCACGAAATAAGAAAATTCGAATGTAACAATTGCGATTATATAGCGGTTTCGAAAGAGCGCCTTGTATCGCATATGACAAAGCACGATCCTTTAAGTATCGATTATAAATGCAATCTGTGTTCGTTTACTTCAAAATATAAAAGGTACGTAAAGAGACACGCTCTTCTGCATAAAGAGACTACGATTTTCCAATGTGATAAGTGTTCATTTTCAACCAAATGCAAGGCCCACTTAAAGATTCACGTAAAAATTCACGTTTCCCACATTTACAGATGTCACAAGTGCAATTACGCTACATTTGAGAAACAGAGTTTAAATTTGCATATGGCAAATCATGCTCTAACTATGGAATTTAGGTGCGCTCACTGTCCCTATGTAACCAAACACAAACTGGACTTGGCGTCCCATGTTAGATCACATAACAGCCATTCGTCAAACGAATACCACTGTTACCAGTGTTCATTTACAACGGAAGACAAACGGTTATTACAATCGCACTTTTCAAGAATGCACACTGCGATTTTATACAAATGTGAGCAATGCGATTACACGACCAATTTAAAACGTGACCTAAGAAAACACAATACCACCCACAACTCTTCGACTGCAAAATGTTCTCTGTGTCCATTTACGACGAAAGGAAAGTTATATTTAAAAAGACATTATACTATGAAACACAATCCTTCAACACCGTTTAAGTGTAATCAGTGTGAGTACACGTCTAATTTAAAACGCGAGTTAGACGTACATGTTGCAAAGCATAATGCTGTAACAATcgaatttaaatgtattttttgtggCTATATGACGAATGATAAAAGTGATTACAGAAATCACGTTACAAATCATAATCCCCCAAAAGTgtttaaattgtaa
- Protein Sequence
- MSAEIKMESEHDGCVYIYETVSKKIKSESKDELNSIVSATVDDNLDSLKVENGVIKSEREDYEVIDEKPNVTCVYFTEPNREEIEAPRQEEMTPANLLKCTQCSYVTMMKWSLKRHLLLHNKSKELKCKQCKYVTSEERYLKSHMKTHHSSRVEFKCKHCLFTTKQRNVFKQHTRHIPGKPLKCDQCSFTTKYRQSLWNHAQIHKTPQVFKCGKCEYRSFSRQYYNCHVRTHDPSSIAYTCDVCYFTTKNRRSFLSHRRVHSVTKPLKCDRCSFVTKYRENLNRHRIIHHEIRKFECNNCDYIAVSKERLVSHMTKHDPLSIDYKCNLCSFTSKYKRYVKRHALLHKETTIFQCDKCSFSTKCKAHLKIHVKIHVSHIYRCHKCNYATFEKQSLNLHMANHALTMEFRCAHCPYVTKHKLDLASHVRSHNSHSSNEYHCYQCSFTTEDKRLLQSHFSRMHTAILYKCEQCDYTTNLKRDLRKHNTTHNSSTAKCSLCPFTTKGKLYLKRHYTMKHNPSTPFKCNQCEYTSNLKRELDVHVAKHNAVTIEFKCIFCGYMTNDKSDYRNHVTNHNPPKVFKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -