Ppec020767.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070077.1:3845676-3847280[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.2 13.6 5.4 1 23 136 159 136 159 0.96 2 14 0.00031 0.054 15.3 1.1 1 23 165 187 165 187 0.98 3 14 0.043 7.5 8.6 1.3 2 23 194 215 193 216 0.94 4 14 0.011 1.8 10.5 5.0 2 23 222 244 221 244 0.96 5 14 0.0061 1.1 11.3 0.5 2 21 250 269 249 270 0.94 6 14 0.019 3.4 9.7 0.9 2 23 279 300 278 300 0.96 7 14 0.0022 0.38 12.7 2.4 2 23 309 330 308 331 0.94 8 14 0.035 6.1 8.9 5.2 2 23 337 359 336 359 0.96 9 14 0.00016 0.028 16.2 0.9 1 23 364 386 364 386 0.99 10 14 0.00048 0.084 14.7 2.3 2 23 394 415 393 415 0.96 11 14 0.0014 0.24 13.3 2.2 1 23 421 444 421 444 0.98 12 14 0.0024 0.42 12.5 3.6 2 23 450 471 449 471 0.97 13 14 0.00098 0.17 13.8 3.1 2 23 477 498 476 498 0.97 14 14 0.63 1.1e+02 4.9 5.1 2 23 506 527 505 527 0.97
Sequence Information
- Coding Sequence
- ATGGCCACAGAAAATATGATAATACTAAAGAAAATCAAAGATGAACCACAGCTGGAAATGGAACCCCTTGAACCAAAGCAGGAAGAACTGAATTGCTTCCTTATAACagaagtttataaattaaatgaaccAAAGATCGAATTGACAGAAACACATATAAGTTCAGTTTACGAAGAAACACACCACCAAGTTGAACCGAAACAGGAGGAAAAACCAACTTCCTTCTTTTTCGCACAAGatcatcaaataaatttcaatCCCACACAATCTTTTCATGATGACAAAGCTGGTATAATTAACGAAAGTGGAACTGAACTACATGCAGTCATTCCCCAAACGGACCAAGACACCGTTTTAGAATATAAAATGGAGGCGAATGTTTCTAAAAAATCcagtttaaaattgtttaaatgtcatcattgCAGTTTTACCACAAAAAGAAAACAGGGTTTAACAAATCATGTGAGAGCAATCCATGAGAGTTCGgtagaatttaaatgtaatcagtgtaGTTATGCCACAACATGGAAGAGCAATTTATCGAGACATATACGAGGACATCTTAATTTGAGAGAGTTAAAATGTGATCAATGCATGTATGCCGCAAAACGGAAAGATGCTTTATTAAATCATAGGAAAGTTCATCACAATTCAGAAGAGTTGAAATGCGAGCATTGCAACTTTAGCACAAAATTAAAGGACTATTTACACAAACATGTGAAAATGATTCATGGTACGTTTGAACTTAAATGCGATCGATGCACTTATGGTACAAAATCGAGggtaaatttattgaaacacaTAAAAAGTAATTGCTCCGATTTAGAAGAACTTAAATGTAACCAGTgtagttttgtcacaaattggAAGAACAATTTATCGAGACATATACGAGGACATGGACATCTTGATTTGAAAGATTTAAAATGCGATCAATGTACGTATGTAGCAAAACGGAAAGATTCTTTATTGAATCACAAGAAAGTCCATCATGATTCAGAGGAGTTGAAATGTGAGCATTGCACCTTTACCACGAAATTAAAGGACTATTTACACAAACATGTGAAAATGATTCACGGTTCAGTTGAATATAAATGCGATCAATGCGCTTACAGTACAAAATCTAGggtaaatttattgaaacacgTAAAAATTCATTGCCCCGACTTAGAAGAGCTTAAATGTCAACAGTGTAGTTATGTTACAACACGTAAAGATTATTTATCGAGACATACGAAACTGCATAATGCTCCAGAACAGTTCAAATGTGATCAGTGTGACtttactacaaaattaaaaagatatttACTGAAACATTGGAGGATTAATCACGGTTCGGTTGAACTTAAATGTTATCAATGCACCCACACCACGAAATCTAGGGAAAGTTTATTGAATCATATGAAAGTTCATCGTCTCGAAGAACTTAAatgtcaacattgtagttacGTTACAAAAtggaagagtaatttattgaaacatatgAAAATCCATAATTCCGTTCCCAAAGAAATGAAATGTCAGCATTGCAGTTTCACTTCAAAATGGCGTGGCAGTTTTCAGAGACATctaaaaagacatttttgttCTGAAGAGTTAAAATGA
- Protein Sequence
- MATENMIILKKIKDEPQLEMEPLEPKQEELNCFLITEVYKLNEPKIELTETHISSVYEETHHQVEPKQEEKPTSFFFAQDHQINFNPTQSFHDDKAGIINESGTELHAVIPQTDQDTVLEYKMEANVSKKSSLKLFKCHHCSFTTKRKQGLTNHVRAIHESSVEFKCNQCSYATTWKSNLSRHIRGHLNLRELKCDQCMYAAKRKDALLNHRKVHHNSEELKCEHCNFSTKLKDYLHKHVKMIHGTFELKCDRCTYGTKSRVNLLKHIKSNCSDLEELKCNQCSFVTNWKNNLSRHIRGHGHLDLKDLKCDQCTYVAKRKDSLLNHKKVHHDSEELKCEHCTFTTKLKDYLHKHVKMIHGSVEYKCDQCAYSTKSRVNLLKHVKIHCPDLEELKCQQCSYVTTRKDYLSRHTKLHNAPEQFKCDQCDFTTKLKRYLLKHWRINHGSVELKCYQCTHTTKSRESLLNHMKVHRLEELKCQHCSYVTKWKSNLLKHMKIHNSVPKEMKCQHCSFTSKWRGSFQRHLKRHFCSEELK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -