Ppec023907.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- prdm10
- Assembly
- GCA_036250285.1
- Location
- CM070077.1:49089241-49100802[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.036 15.9 0.2 2 23 464 485 463 485 0.96 2 13 0.96 1.7e+02 4.3 1.0 2 15 519 532 518 542 0.78 3 13 0.076 13 7.8 0.7 1 23 559 581 559 581 0.94 4 13 1.4 2.4e+02 3.9 3.6 2 19 591 608 590 611 0.90 5 13 0.00021 0.037 15.9 1.4 2 23 624 645 623 645 0.96 6 13 0.05 8.8 8.4 2.9 2 23 654 675 653 675 0.97 7 13 0.011 2 10.4 0.3 1 20 682 701 682 704 0.93 8 13 0.0042 0.73 11.8 2.5 1 23 710 733 710 733 0.95 9 13 4.5e-05 0.008 18.0 1.2 1 23 738 760 738 760 0.96 10 13 1.4e-05 0.0024 19.6 2.0 1 23 766 789 766 789 0.94 11 13 0.014 2.4 10.1 1.1 1 23 825 848 825 848 0.97 12 13 0.00019 0.034 16.0 2.3 1 23 870 893 870 893 0.97 13 13 0.0017 0.3 13.0 2.6 3 23 933 954 932 954 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGTACCATTGAGGGCCCTTCGTCATGCAATAACAGCTTAACTATAAGCAATTTCAATGCAAATTCTTGGACATCGACTCAAACTTCGACGAACAGAAATCCGACATATCTGTTTATAGCTGTGGAATATGTTAAAGATACTGACGAGTATAAAATTGCCACTGACGATTTTTCAAATCGAACCCCGCCACCCTGTACGGACTTTCAGGAACATGTAAGTCCATTAGATCCGAATATGAGTTCGGCGGCACGTTACAGTCCATCTGCTAACGACGGCGATATTACAAATTATAACAACTCTGTTGTGGTACCTCAGTTAATTACCGCAACTACTAATTCGCAACTCTTAAATTCCAATCGTGATTCATTTATCAATCATTTAGTAGAACCAAACACTCCACTGGAACATATTCCGACACTTTCAAATTCCGAAACAAACCTTTTGAAGGAAGTGGTTAGCAATCGATACTTACTTAATCAAGGGCCTACCGCAAACGCTACTTCCAATTCGGGTGTTTTGCAGTTAGTGTCCGATCGAAATCCCGAACATGAAGTTGAACTGTTAATTACAGACCAAACGACCGGTATATCGTACAATGTCAGTACTCAAGAATATTTAGTCGAACGTTGCTTAGCCGACGAGCAACATCTTTTAGAAGCGTTAGCACCGGATCCGTTACTAGACACCGATCTTCTAACGCTAGACGTTTCCACTTTAAAATCGCAGCTACCGGATATTGTCGAATCGACTACTTTAGATACGGAACTAATATCAAACTCTGTAATTCATCAACACTTAACCGATTTAGAAATTAAAACTGAGGATTTCGACGATAAGGAGTTGAGCCGCGAAAATTTACGAAGATCGCTGCGTCAGCACGATCTTAAAGCTACGGAGAAAGATAACATCTTCCtaaGTAAAGTTCATACGATTAGTGATAAACCTGTGGAATCTCGTGCGAAAGCAACATTACCCGCACATTATTTGGCTATCATTAAAAATGACAACGGGGGTTTCGGTGTGTTTGCACGAAAATTAATTCCGAAACAAACACAGTTTGGTCCATTGGAAGGATTATTAGTTGTTAATGATGGGCGGCCTAATAGTGACGAATTGCAGTTATTATTGGAGTCGGATAATGGATTGGTGCATCGTCTGGATGTATCTGATGATCGTGTTGCTAATTGGATGTGTTACGTGCGGCAAGCTAAAACTTATATGGAACAGAATGTACTTGTACTTCAACGGGGTGGTGCCCTTTATTATACAACTGTAGTTAACATATTGCCTAAACAGGAACTTCTGGTGGGATACAGCCAAGATTATGCCAAAAAACATTCTCTTCCTGTTTTGCAACCGATTGTGTGGAAACAAAATGATTGGCCCTGTTTCGAATGTGACAAACAATTTGCATCCTCAATAGAACTGCAAACACATTTGGATAAACATGATGAAGTTAAAAAAGAAGAGCAAATatcaaaagtaaaaaagaaaatacttaaaaataaacgaaaaaagtttaaaaagaaatatcaaaaacaaGTACTCGAATGCAATACTTGTAAGGAAGTATTTATTAACCCCGAGTATGTAATACTAAAAAAGCATCTATTTATGCACGGAATAGGATCTTGTTTTGATTTTGAAGAGAAATTTACGGTGCTTACTTACCACTGTTCAAAATGTGACGCTTACTTTGAATCGGATGCCCTTTTAAAAGTGCACGGTTTACAACATCGTGTCGACTCTAACGAAATACAGTTGAGCTGCTCTGATTGCCACAAAGaatttttaagtaaagacgAATTTGATAAACACAATTGCCGCTCGACGGATAAACCTCAGACTAATAAAAATGGCTGTAAATGTCCGGTCTGTTACAAAATGTTCGCATCACAGGAGCGAATTCAACGTCATATGTTGGTGCACGGTTCGGAAGAATCGAAGCCGCTAAAATGTGACACTTGTAATAAACGATTCTTGAACAATTCCGCTCTCGCCTGTCACTTAAAAACGCACAGTGTAGGCAAGCGAATGTTTGAATGTCCAATGTGCAACGAAAGCTTTCAACATGTCCTACAATTAAAGGTACATGTTCCGCTACACTGTATCGATGGCAAATATACATGTCCACACtgtaagaaaatttttaaagagTATAGTATTATAAGAAAGCACATACGTGCATTTCATTGTGAACGTAAACACAATTGTCCACAATGCAATAAGCCATTTCCCACCCTGGATAAGCTTCGTATGCACTTGTTGCGTCATTCCGATCATCGAGAATTTTTATGCGCAGATTGTGGCAAACAGTTTAAGCGCAAAGACAAGTTAAAGGAGCACACGAAACGGATGCATTCGGAAGAACGAGAAAACACAATTCCGAAACCTTCAAAACTTGCgatgcaaaataataaaaaatttacccCCAAGGTCCAACCGACAGACTACCACCGCTTTATTTACAAATGTCACGCTTGCCTCGTTGGATTCAAGCGGAGAGGCATGTTAGTGAATCACTTAGCAAAACGTCATCCGGATATAAGTCCAGGTTCTGTTCCCGAACTTAATCTTCCAATTTTAAGAACAACTAGAGATTATTATTGTCAATATTGCGACAAAATTTACAAGAGCAGTTCAAAACGAAAAGCGCATATATTGAAAAATCATCCCGGACAGGCGTTACCTATGAGTAATCGGAGGCAAGGTTCATTTCCAGATGTAGCGGGTTTACCTAATCCGACGTTCTCTCAAACTGTTGGAAGTGTTACGACTCATCCGCAAGCTTGTCAGTGGTGCCATAAGCAGTACGCCAGTAAAGCAAAATTGTTACAGCATCAGCGTAAAAAACATTCGGAATTACTTGAAAATCGTGGTCAGAACCACCAAAATAATTTAAGCGACCAAAATGTTCGTACGGATCAACTTGGAATTGACCAACAGACTTTTCATCGTGACTTTAAGgTATCTGACGAGGATCTACTTGCCGAGGTAGTAACATTGAATAATAACAGAGACGACGATCAATATTATCATATTATTTCGATACCAACAAACGATGGGGCCGTTTTTAATCATACACCTGATGCCAATCATACATCTGATTCTCGTTTGTACCGTTTGCTGACTACTGGAAATGGTCTTTTGCCTCCACGTTGA
- Protein Sequence
- MESTIEGPSSCNNSLTISNFNANSWTSTQTSTNRNPTYLFIAVEYVKDTDEYKIATDDFSNRTPPPCTDFQEHVSPLDPNMSSAARYSPSANDGDITNYNNSVVVPQLITATTNSQLLNSNRDSFINHLVEPNTPLEHIPTLSNSETNLLKEVVSNRYLLNQGPTANATSNSGVLQLVSDRNPEHEVELLITDQTTGISYNVSTQEYLVERCLADEQHLLEALAPDPLLDTDLLTLDVSTLKSQLPDIVESTTLDTELISNSVIHQHLTDLEIKTEDFDDKELSRENLRRSLRQHDLKATEKDNIFLSKVHTISDKPVESRAKATLPAHYLAIIKNDNGGFGVFARKLIPKQTQFGPLEGLLVVNDGRPNSDELQLLLESDNGLVHRLDVSDDRVANWMCYVRQAKTYMEQNVLVLQRGGALYYTTVVNILPKQELLVGYSQDYAKKHSLPVLQPIVWKQNDWPCFECDKQFASSIELQTHLDKHDEVKKEEQISKVKKKILKNKRKKFKKKYQKQVLECNTCKEVFINPEYVILKKHLFMHGIGSCFDFEEKFTVLTYHCSKCDAYFESDALLKVHGLQHRVDSNEIQLSCSDCHKEFLSKDEFDKHNCRSTDKPQTNKNGCKCPVCYKMFASQERIQRHMLVHGSEESKPLKCDTCNKRFLNNSALACHLKTHSVGKRMFECPMCNESFQHVLQLKVHVPLHCIDGKYTCPHCKKIFKEYSIIRKHIRAFHCERKHNCPQCNKPFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHTKRMHSEERENTIPKPSKLAMQNNKKFTPKVQPTDYHRFIYKCHACLVGFKRRGMLVNHLAKRHPDISPGSVPELNLPILRTTRDYYCQYCDKIYKSSSKRKAHILKNHPGQALPMSNRRQGSFPDVAGLPNPTFSQTVGSVTTHPQACQWCHKQYASKAKLLQHQRKKHSELLENRGQNHQNNLSDQNVRTDQLGIDQQTFHRDFKVSDEDLLAEVVTLNNNRDDDQYYHIISIPTNDGAVFNHTPDANHTSDSRLYRLLTTGNGLLPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -