Ppec033313.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrocoelia pectoralis
Gene Symbol
-
Assembly
GCA_036250285.1
Location
CM070080.1:27038590-27042219[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.073 13 7.9 3.8 2 23 150 171 149 172 0.95
2 36 0.0089 1.6 10.7 5.1 2 23 208 229 207 229 0.96
3 36 0.014 2.5 10.1 5.2 1 23 235 257 235 257 0.99
4 36 0.0036 0.63 12.0 1.6 2 23 265 286 264 286 0.97
5 36 0.0051 0.89 11.5 2.1 1 23 292 314 292 314 0.98
6 36 0.41 71 5.5 2.5 2 23 322 343 321 343 0.96
7 36 0.028 4.8 9.2 5.3 2 23 351 372 350 372 0.96
8 36 0.014 2.5 10.1 5.2 1 23 378 400 378 400 0.99
9 36 0.0036 0.63 12.0 1.6 2 23 408 429 407 429 0.97
10 36 0.0035 0.6 12.0 5.1 1 23 435 457 435 457 0.99
11 36 0.0093 1.6 10.7 4.2 2 23 465 486 464 486 0.97
12 36 0.0051 0.9 11.5 2.0 1 23 492 514 492 514 0.98
13 36 0.14 25 7.0 2.6 2 23 522 543 521 543 0.96
14 36 0.34 59 5.8 7.7 2 23 551 572 550 572 0.97
15 36 0.0047 0.83 11.6 1.4 1 23 578 600 578 600 0.98
16 36 0.14 25 7.0 2.6 2 23 608 629 607 629 0.96
17 36 0.34 59 5.8 7.7 2 23 637 658 636 658 0.97
18 36 0.0047 0.83 11.6 1.4 1 23 664 686 664 686 0.98
19 36 0.14 25 7.0 2.6 2 23 694 715 693 715 0.96
20 36 0.028 4.8 9.2 5.3 2 23 723 744 722 744 0.96
21 36 0.014 2.5 10.1 5.2 1 23 750 772 750 772 0.99
22 36 0.0036 0.63 12.0 1.6 2 23 780 801 779 801 0.97
23 36 0.0035 0.6 12.0 5.1 1 23 807 829 807 829 0.99
24 36 0.0093 1.6 10.7 4.2 2 23 837 858 836 858 0.97
25 36 0.0051 0.9 11.5 2.0 1 23 864 886 864 886 0.98
26 36 0.14 25 7.0 2.6 2 23 894 915 893 915 0.96
27 36 0.34 59 5.8 7.7 2 23 923 944 922 944 0.97
28 36 0.0047 0.83 11.6 1.4 1 23 950 972 950 972 0.98
29 36 0.18 31 6.7 1.7 2 23 980 1001 979 1001 0.96
30 36 0.34 59 5.8 7.7 2 23 1009 1030 1008 1030 0.97
31 36 0.0013 0.22 13.4 1.5 1 23 1036 1058 1036 1058 0.99
32 36 1.3 2.3e+02 3.9 1.6 2 23 1066 1087 1065 1087 0.94
33 36 0.03 5.2 9.1 4.0 2 23 1095 1116 1094 1116 0.95
34 36 0.0027 0.47 12.4 2.2 1 23 1122 1144 1122 1144 0.98
35 36 0.0036 0.62 12.0 4.7 2 23 1152 1173 1151 1173 0.97
36 36 0.032 5.6 9.0 3.7 1 23 1179 1201 1179 1201 0.98

Sequence Information

Coding Sequence
atgtccaCAGAAATTAACAGAATCAAAAAGCCACAGCTAGAAATTGAAGGGGTCGGACCAAAACAGGAGGAAGAAGTAAATTCCCCCCTTGTAAAAGAAATTGATCATATGAAAGAAACACAGTTggaaacaaaagaaataaattcaatttgcGAAGAAACGCTGAGCCTAGTTGAACCAAAACAAGAGGAAGTACTAAATTCTTTCCTTTCCACACaatattatgaaataaatttcaatCACCCACAATCGTTTGGTAATAACAAAACTGATACAATTATCAGAAGTGGATCAAAACTGTGTGTAGTCATTTCCCAAGCGGACCAGGACGCAGTTTTAAACTATGtttctaacaaatttaaatatcaaaagtctAGTTATGTCGCAAAACAGAAACATACAAATTTATCGAAACATAAGAAAATACATCATGATTCCGAAGAGTTGCAATGCCAACACTGTCGTTATGCAACAAAATGGAAAGGGAATTTATCGAGTCATATGAAAATTCATCACCCTGGCTTAGAACAGCTTAAGTGTCAACACCGTAGTTATGCGACAAAATGGAATgggaatttattaaaacataagaTAATTCATCGTACCGATTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATGTTACAAAGCGGAAAGAATATTTATCGAAACATAAGAAACTGCATAATGATTCCGAAGAGTTCCAATGTCACCAGTGTAAGTTTACTACAAAGTTAAAAAGATATTTAGTGAAACATGTGAGAATTCATCGTCCTGGTTTAAAAAAGCTTAAGTGTCGACAGTGTAGTTATGTCGCAAAACAGAAAGAATATTTATCAAAACATATGAAACTACATAATGTTTCCGAAGAGTTCCAGTGTCAACACTGTAGTTATGCAACAAAATGGAAAGGGAATTTATTGAGTCATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATACGACAAAATGGAAAGGGAGTTTATTAAAACATAAGATAATTCATCGTACCGATTTAGAAGAACTTAAGTGTCAACACtgtagttttgtcacaaaacgGAAAGAATATTTATCGAAACATAAGAAACTGCATAATGATTCCGAAGAGTTCCAATGTCACCAGTGTAAGTTTACTACAAAGTTAAAAAGATATTTAGTGAAACATGTGAGAATTCATCGTCCTGGTTTAAAAAAGCTTAAGTGTCGACAGTGTAGTTATGTCGCAAAACAGAAAGAATATTTATCAAAACATATGAAACTACATAATGTTTCCGAAGAGTTCCAATGTCACCAGTGTAAGtttactacaaaattaaaaacatatttagtgCAACATATGAGAATTCATCGTCCTGGCTTAAAAACGCTTAAGTGTCAACACTGTAGTTATGTCACAAAGCGGAAAGATGGTTTTTTGAAACATAAGAAAGTACATGATGATTCCGAAGAGTTCCAATGTCAACACTGTAGTTATGCGACAAAATGGAAAGCGAATTTATTGAGTCATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATACGACAAAATGGAAAgggaatttattaaaacataagaTAATTCATCGTACCGGTTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATATCACAAAGCGGAAAGATTGTTTTTTGAAACATAAGAAAGTACATAATGGTTCTGAAAAGTTCCAATGTCAACACTGTAGTTATGCGGCAAAATGGAAAGCGAATTTATTAAGACATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATACGACAAAATGGAAAgggaatttattaaaacataagaTAATTCATCGTACCGGTTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATATCACAAAGCGGAAAGATTGTTTTTTGAAACATAAGAAAGTACATAATGGTTCCGAAAAGTTCCAATGTCAACACTGTAGTTATGCGGCAAAATGGAAAGCGAATTTATTAAGACATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATACGACAAAATGGAAAgggaatttattaaaacataagaTAATTCATCGTACCGATTTAGAAGAACTTAAGTGTCAACACtgtagttttgtcacaaaacgGAAAGAATATTTATCGAAACATAAGAAACTGCATAATGATTCCGAAGAGTTCCAATGTCACCAGTGTAAGTTTACTACAAAGTTAAAAAGATATTTAGTGAAACATGTGAGAATTCATCGTCCTGGTTTAAAAAAGCTTAAGTGTCGACAGTGTAGTTATGTCGCAAAACAGAAAGAATATTTATCAAAACATATGAAACTACATAATGTTTCCGAAGAGTTCCAATGTCACCAGTGTAAGtttactacaaaattaaaaacatatttagtgCAACATATGAGAATTCATCGTCCTGGCTTAAAAACGCTTAAGTGTCAACACTGTAGTTATGTCACAAAGCGGAAAGATGGTTTTTTGAAACATAAGAAAGTACATGATGATTCCGAAGAGTTCCAATGTCAACACTGTAGTTATGCGACAAAATGGAAAGCGAATTTATTGAGTCATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATACGACAAAATGGAAAgggaatttattaaaacataagaTAATTCATCGTACCGGTTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATATCACAAAGCGGAAAGATTGTTTTTTGAAACATAAGAAAGTACATAATGGTTCCGAAAAGTTCCAATGTCAACACTGTAGTTATGCGGCAAAATGGAAAGCGAATTTATTAAGACATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATGCGACAAAATGGAAAgggaatttattaaaacataaaataattcaTCGTACCGGCTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATATCACAAAGCGGAAAGATTGTTTTTTGAAACATAAGAAAGTACATAATGGTTCCGAAGAGTTCCAATGTCAACACTGTAGTTATGCGGCAAAATTGAAAGGGAATTTATTGAGTCATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAATTGTCAACATTGTAATTTTGCGACAAAATGGAAAGGGAGTTTATTAAAACATAAGATAATTCATCGTACCGATTTAGAAGAGCTTAAGTGTCAACACtgtagttttgtcacaaaacgGAAAGAATATTTATCGAAACATAAGATACTGCATAATGATTCCGAAGAGTTCCAATGTCAACACTGTAGTTATGCGTCAAAATGGAAAGGGAATTTATTAAGACATATGAAAATTCATCGTACTGACTTGGAAGAGCTTAAGTGTCAACACtgtagttatgtcacaaaacggAAAGAATATTTATCTAAACATAAGAAAGTACATAACGTTTCGGAAGAGTTCCAATGTCACCAGTGTAAGTTtaccacaaaattaaaaacatatttagtgAAACATGTGATAATTCATGGTCCTGGCTTAGAAAAACTTAAATGA
Protein Sequence
MSTEINRIKKPQLEIEGVGPKQEEEVNSPLVKEIDHMKETQLETKEINSICEETLSLVEPKQEEVLNSFLSTQYYEINFNHPQSFGNNKTDTIIRSGSKLCVVISQADQDAVLNYVSNKFKYQKSSYVAKQKHTNLSKHKKIHHDSEELQCQHCRYATKWKGNLSSHMKIHHPGLEQLKCQHRSYATKWNGNLLKHKIIHRTDLEELKCQHCSYVTKRKEYLSKHKKLHNDSEEFQCHQCKFTTKLKRYLVKHVRIHRPGLKKLKCRQCSYVAKQKEYLSKHMKLHNVSEEFQCQHCSYATKWKGNLLSHMKIHRTDLEELKCQHCSYTTKWKGSLLKHKIIHRTDLEELKCQHCSFVTKRKEYLSKHKKLHNDSEEFQCHQCKFTTKLKRYLVKHVRIHRPGLKKLKCRQCSYVAKQKEYLSKHMKLHNVSEEFQCHQCKFTTKLKTYLVQHMRIHRPGLKTLKCQHCSYVTKRKDGFLKHKKVHDDSEEFQCQHCSYATKWKANLLSHMKIHRTDLEELKCQHCSYTTKWKGNLLKHKIIHRTGLEELKCQHCSYITKRKDCFLKHKKVHNGSEKFQCQHCSYAAKWKANLLRHMKIHRTDLEELKCQHCSYTTKWKGNLLKHKIIHRTGLEELKCQHCSYITKRKDCFLKHKKVHNGSEKFQCQHCSYAAKWKANLLRHMKIHRTDLEELKCQHCSYTTKWKGNLLKHKIIHRTDLEELKCQHCSFVTKRKEYLSKHKKLHNDSEEFQCHQCKFTTKLKRYLVKHVRIHRPGLKKLKCRQCSYVAKQKEYLSKHMKLHNVSEEFQCHQCKFTTKLKTYLVQHMRIHRPGLKTLKCQHCSYVTKRKDGFLKHKKVHDDSEEFQCQHCSYATKWKANLLSHMKIHRTDLEELKCQHCSYTTKWKGNLLKHKIIHRTGLEELKCQHCSYITKRKDCFLKHKKVHNGSEKFQCQHCSYAAKWKANLLRHMKIHRTDLEELKCQHCSYATKWKGNLLKHKIIHRTGLEELKCQHCSYITKRKDCFLKHKKVHNGSEEFQCQHCSYAAKLKGNLLSHMKIHRTDLEELNCQHCNFATKWKGSLLKHKIIHRTDLEELKCQHCSFVTKRKEYLSKHKILHNDSEEFQCQHCSYASKWKGNLLRHMKIHRTDLEELKCQHCSYVTKRKEYLSKHKKVHNVSEEFQCHQCKFTTKLKTYLVKHVIIHGPGLEKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-