Basic Information

Insect: Pyrocoelia pectoralis
Gene Symbol: -
Assembly: GCA_036250285.1
Location: CM070083.1:7139620-7141407[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00014 0.024 16.5 1.4 2 23 157 178 156 178 0.97

2 11 1.3e-05 0.0022 19.7 6.0 1 23 184 206 184 206 0.98

3 11 0.0024 0.42 12.5 3.5 1 23 212 234 212 234 0.98

4 11 0.0012 0.21 13.5 1.8 1 23 248 270 248 270 0.97

5 11 3.4e-05 0.006 18.3 4.7 1 23 319 341 319 341 0.99

6 11 0.00011 0.019 16.8 1.3 1 23 347 369 347 369 0.98

7 11 0.00081 0.14 14.0 6.1 1 23 375 397 375 397 0.98

8 11 0.086 15 7.6 0.2 3 23 406 426 404 426 0.97

9 11 1.1e-05 0.0019 19.9 6.0 1 23 469 491 469 491 0.98

10 11 0.00064 0.11 14.3 0.9 2 23 524 545 523 545 0.97

11 11 5.8e-05 0.01 17.6 3.8 1 23 551 573 551 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00014	0.024	16.5	1.4	2	23	157	178	156	178	0.97
2	11	1.3e-05	0.0022	19.7	6.0	1	23	184	206	184	206	0.98
3	11	0.0024	0.42	12.5	3.5	1	23	212	234	212	234	0.98
4	11	0.0012	0.21	13.5	1.8	1	23	248	270	248	270	0.97
5	11	3.4e-05	0.006	18.3	4.7	1	23	319	341	319	341	0.99
6	11	0.00011	0.019	16.8	1.3	1	23	347	369	347	369	0.98
7	11	0.00081	0.14	14.0	6.1	1	23	375	397	375	397	0.98
8	11	0.086	15	7.6	0.2	3	23	406	426	404	426	0.97
9	11	1.1e-05	0.0019	19.9	6.0	1	23	469	491	469	491	0.98
10	11	0.00064	0.11	14.3	0.9	2	23	524	545	523	545	0.97
11	11	5.8e-05	0.01	17.6	3.8	1	23	551	573	551	573	0.98

Sequence Information

Coding Sequence: ATGGATACGCACGACAGTTTTTACGATTACGATATATCGACAATAAATTGTGTGAATATATCACAGGTAAAGACCGATTTCAGGATAAGCGACGACGAAGATGACGAAACACTAAAGGAGCCGAAGAAGTTTTATACGTTAACCAATTTCGTCGAATCGATCGATGTTAAACAGGAAATAAACGgtgataataatgataatagcCAACCGTCGACGGATATTCCCATTGCGATAGTCGAAACGCAACCTAGTAAGGAGTACGACGATCTTAATCACGAAGGGGAGTTCATTAATATTAACATTTCCAAGCCGGCGAACGAAAAACATTATATTATCGAAACGTATTCGAACGATATCGATTTGCATGACTTGGAAAAACGACCCACAACACCGCCACCGCCCGAATATGCGAATTCGGAACCTTTGGACGTTATTACGGTGATGGAAGTCGACGTCGAGGTTCCCATCAAGTGTAAGGATTGCGATTTTACGACGTTTAACGACGACGAATTAAAATCGCACATGAAAACGCATGTGCCCCCCTCGCAGTTTAGCTGTAATGTTTGcggtcatttttttaaacatagtTACAGCGTGAAACGTCATATGCGAATACATACGCGTGTCGCCGCCTATAAATGTACCGAATGTAGTTTTGAATGTCAACGGAGCGAGTCGTTAAAGGCGCATAAAAAAATTCACGCCGACGATAAGAGTGTCGCGAATAGTTCGGCGGTTACTCACAAATGTAACATTTGTTCGTTTACCACGGCGAATAAATCGTTATTAAAGGGCCACCTCGATAGTCACAACGCCAAAGAGTCGCTTAAAAGCGAGGAAAGTGACGTTAGCGCCACCACTCAACTATTATTAGGTATAACGACGAGTGATAGCGACGAAAGGGCGTCTAACAACTTTAATAACGTCGTTAACGATacgaaattagaaaatttgtttaaatgtaGCGACTGCAACTATAGTACGACGAAGCTAGTTCACCTTAAGATGCACATGCGAAAGCACAGCGCCGACGTtccttttaagtgcaaactGTGCGATTACACGACCGCAAAGAAGGGCAATTTCGTCGTACACCTGCGCAATCATACGGGCGAAAAACCGTACAAGTGCGCTCTGTGCGGTTTCACGTGTAAGCAATTCATTCACCTAAAACGACACATCAAGAATCACGTCAACGAGGACGAACTCTTCGGATGTAGCAAGTGCGATTACAAGACGGGCGAGGGACGTGAACTCGAGATACATATAAAAACGCACGGCGGTTCCTCGGAATTTTTCCTCGACGAGTTACAGTTCGAGGACGAAAGTTCGGACGCGCATTCGAATTCGTCCGACGCATACGTCGGTGGCGAAAATCGTAAAAAGGCGACGAAAACGAAAATGCATAAATGTCCGCATTGCGATTACACGACGAACCAGACGGGTAATCTTAAACGTCACCAAAAAACCCATTTTAAAGAGACGGAAAAATCGACACCTTGTAGCATTTCGCCCATCGCGTTGGACGTCGTACCGAAACTCACCACCAACACACCGGATAACATTTTGGAATGTCCCGAATGTCAGTACAAAGCGACGCGAAAACATCAAATGGACATACACATGCGCGTCCATAACGGTAAACAACTACACGAATGTAATTTATGTGATTATAAGTCCATTAACAAATATAATTTATCGAGACATCAAAAAACGCACACGTTCGACGATTCCAACGGTTGTCAAACTACGAAAGGGCAAATTATAAATTCGGAAGTATTAACTTAA
Protein Sequence: MDTHDSFYDYDISTINCVNISQVKTDFRISDDEDDETLKEPKKFYTLTNFVESIDVKQEINGDNNDNSQPSTDIPIAIVETQPSKEYDDLNHEGEFININISKPANEKHYIIETYSNDIDLHDLEKRPTTPPPPEYANSEPLDVITVMEVDVEVPIKCKDCDFTTFNDDELKSHMKTHVPPSQFSCNVCGHFFKHSYSVKRHMRIHTRVAAYKCTECSFECQRSESLKAHKKIHADDKSVANSSAVTHKCNICSFTTANKSLLKGHLDSHNAKESLKSEESDVSATTQLLLGITTSDSDERASNNFNNVVNDTKLENLFKCSDCNYSTTKLVHLKMHMRKHSADVPFKCKLCDYTTAKKGNFVVHLRNHTGEKPYKCALCGFTCKQFIHLKRHIKNHVNEDELFGCSKCDYKTGEGRELEIHIKTHGGSSEFFLDELQFEDESSDAHSNSSDAYVGGENRKKATKTKMHKCPHCDYTTNQTGNLKRHQKTHFKETEKSTPCSISPIALDVVPKLTTNTPDNILECPECQYKATRKHQMDIHMRVHNGKQLHECNLCDYKSINKYNLSRHQKTHTFDDSNGCQTTKGQIINSEVLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -