Ppec005418.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- Zfpm1
- Assembly
- GCA_036250285.1
- Location
- CM070074.1:83310657-83319011[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.7 6.5e+02 2.5 0.0 2 23 7 28 6 28 0.91 2 14 0.078 14 7.8 0.9 1 23 499 522 499 522 0.89 3 14 9.2e-05 0.016 17.0 0.4 1 23 638 660 638 660 0.99 4 14 1.1e-05 0.0019 19.9 0.9 2 23 663 684 662 684 0.97 5 14 0.029 5 9.2 2.1 1 23 690 712 690 712 0.97 6 14 3.9e-05 0.0067 18.2 5.9 2 23 719 740 718 741 0.95 7 14 4.7 8.3e+02 2.2 0.8 5 23 754 772 753 772 0.95 8 14 0.0016 0.28 13.1 4.7 3 23 779 800 778 800 0.96 9 14 0.022 3.8 9.5 0.0 2 23 816 836 815 836 0.96 10 14 0.00025 0.043 15.6 1.7 1 20 842 861 842 864 0.92 11 14 0.00031 0.055 15.3 0.2 1 23 872 894 872 894 0.99 12 14 0.0026 0.46 12.4 5.5 1 23 900 922 900 922 0.98 13 14 5.8e-07 0.0001 23.9 3.5 1 23 928 950 928 950 0.98 14 14 0.0028 0.49 12.3 6.9 1 23 956 978 956 979 0.95
Sequence Information
- Coding Sequence
- ATGGATTCCACAAATATAGTGTGTCCGGTGTGCACCTTGTATCTTCGTCCCGGAATTACACTTAAGGCTCATTTGACAAGTCATCCCAAGCAAAAAGTTATCGAAGCACTCGTTAGCTTAACTAATTCCAAAACTGAAGATAAAGAAGTCGCCGTTCCCAGTACTACTGCTCCAGAGGAAATCGCAGATATACCACGAGATGTACCATCTGGCCCTCAAAGTTGGAGTCAACCGGTGTCCGGGTTTTCTCCCATGCAAGGTAACCACTCATTTATATACCAACAGTTCATGAGTACTACAAGTCAACAGCCTTCTAATGTCGTTAACGTAAATCCGTTAACGCAACAATATATAACAATTCCTACAGTTTTTAATCCACAAGTTATGTGCCAACCTTATATGTATCACCAACAACAACAGGTGATTATGTCTGCCGCCACTTCCGTACCTTCGCCGATATTTCGAAAACCACAAATTATCGATCTTTGCGAGACGGATAATGCAAATTCGAACCCTCAACAAGCCGAAGACGACACAACTAGCGCTCTGGAAGTCGACAGTTCCGACTCTTTGGAAAAGAATAAAATCGAAAAAGAAGACATATTACCTAAAGAGCAGGACATGTCGCTAGAACCGGACGACGTAGATTCGCTCACGGAATCTGTCGCAGACGATTTTACCAAATTGGACGACATGGAGAATCCCAAAGAAGAGGAGTTAGATCTCGGTTATGCAGCCCCACCCGAATTTCCGGTCGGATCTCCCACCTCGAGCGAAGGCTCGGACTATATTCGTATACGAAGCGATCTTAATAAAGCGTGTCAAACTCAACACATCAATCAAACGAACGGCGAGTCCGATAATGCGGACGAACAGGGAAGTTTGAGCAATTTCGATAATAAATCGGAAGAACCCGAAGTACAAAATAGTGTGCCTTTGCATAGCTCTTTCGAAGAAAACAATTTGCATTATTCGTCTAACATTTTGCAACCGAACGATCAAGTAATTGATATGGACGGTATGCAGCTGGTGTTGTGCAATGATTTTATGGGTAGTCAATTAATTTCTCAGGTTGAAGATTTTGAATGTATTAATAATCGTACCGAACGAACCGTCTTAATGAATATCGGTGGAATGGATGGTGGCCCTTCGAATACGTATAACGGGGAGGATCACATGGAGGAAGAAAGCGTTTCACGCGAAAGTACCAATATAAGTATTCGAGCCGACGAACCGATGCCACCACGAGGAGAACTGTCCGGTCAGGAAAGTAACGGAGCGGCGAGCGATATTGCCTGGACTCGAATGCATTACGAAAGTAATTCGCTAACTTCCACGTCGTACGATCTTTTGGCGCGTGATACGTGGGACGGTTCCGATTCTTCTGATGCGGAAGTACCACCGTTACAAAGTCGTGTACCTCCTCGTACGCTTTACAATGGCGATGCGGACGATACCCCCACTATCGTTAGCGTCACCGAACCTCCTTTGAATTTTAAATGCTCCATATGCGGTTTAGGATTCAAATGTCCCAAAGAGCGTCGTGTACACCAAGCGGAAGTTCAcagcaaaaaaagtgaagaaaaaaaaGGCGCCAATAACGTTGTCGGTTATAGAGTTGTGGGAAAAAAACCGattaagaaattaattattaaaccgAAAAGAAATACCGAAATTAAAAGCGAAAATAATTTCGATAGTGTTTTCGTCGGCATGTTAAACACGGAATCGCATCCGCCCGATGATAATCAACAGACCGAAACGGAAAGAGCCTCAGTTATTGCTACCGTTAATACCGAATACGATATCGACGATAAAAAGGACGTCAAGTTTTCCGCCGATGGTATCGGTATAAGTCTGCCCGAGAGTCGAAAGAAAACAAAGTTGATAAAAACTTACACCAAATCGTCGTTTAAATGTGATACTTGCGGTGAAACGGCAAAAAACGAATCCTCTTACAATGAACATTTGCGGATACATCCCTTAGAGTGCAATTTGTGCGGCAAATACTTTTATAGgaGACCAAATTTACAACTGCACCTGAAGCGTCACCTCGGCATAAAACCCTATTCGTGCGAATTTTGTCAGAAGTCATTTTTAACGAAGCAAAAATTAGATGAACATAAGAACGTACATACAGGTGAAGCGCCAATAAAGTGTAATATGTGCAATGAAACTTTTAGGAGACATTCCAATTTGGTACAGCATCGTAATCGGCATCATttacatttaaagaaaaaggttaaagattatatttgttattgtggcgaaattttgcattcaaaaaagaaattagctTGGCATAAAGAGATTCACGACGCTAAACCTAAAGCCTGTTTACACTGTAACGAAAAATTCGTGCATATGGCTAGTCTAACTAGACATATGCGTCATGCCCATAACGAACGTTTTGTACCAATCGAAGATAGAAATAATGAGAATGTCGAATGTCCCATTTGTAAAGGAGTTTATCTTAAATCGTCTTTAGAAGTGCACATACGTAACCACAGCGGTCAAAGACCGTTCACATGTTCTGTTTGTAGTAAAGATTTTACCACCAAGTGGAATTTGAAATTGCACAAATGGACACATGCGGCACGTGCAACCAAACCGTACAAATGTGATCAGTGTAATGGCGCTTTTATTAGGGAAACGGACTACGTCGCGCACATGAATTCACATAAAAGTGTACGACCGTACACTTGCAACCATTGTGGTGCTCAATTTATAAGAAAGTACAATTGCCAAAGGCACGTTAAAGAACACGAAAAGGCTAAAACTTTTTCCTGCCAAGTTTGTGGTAAAAGTTTTCATAGATCATATTATCTTAAAGATCATATGCGGGTTCATAGCGGTGTAAGACCTTTTTCTTGTCACGTGTGCGGAAAAACGTCTACAACTAAATCAAATCACAATAAACATGTTATGATACATCATGCGAAAGAACCTGTTagtacagaaaattaa
- Protein Sequence
- MDSTNIVCPVCTLYLRPGITLKAHLTSHPKQKVIEALVSLTNSKTEDKEVAVPSTTAPEEIADIPRDVPSGPQSWSQPVSGFSPMQGNHSFIYQQFMSTTSQQPSNVVNVNPLTQQYITIPTVFNPQVMCQPYMYHQQQQVIMSAATSVPSPIFRKPQIIDLCETDNANSNPQQAEDDTTSALEVDSSDSLEKNKIEKEDILPKEQDMSLEPDDVDSLTESVADDFTKLDDMENPKEEELDLGYAAPPEFPVGSPTSSEGSDYIRIRSDLNKACQTQHINQTNGESDNADEQGSLSNFDNKSEEPEVQNSVPLHSSFEENNLHYSSNILQPNDQVIDMDGMQLVLCNDFMGSQLISQVEDFECINNRTERTVLMNIGGMDGGPSNTYNGEDHMEEESVSRESTNISIRADEPMPPRGELSGQESNGAASDIAWTRMHYESNSLTSTSYDLLARDTWDGSDSSDAEVPPLQSRVPPRTLYNGDADDTPTIVSVTEPPLNFKCSICGLGFKCPKERRVHQAEVHSKKSEEKKGANNVVGYRVVGKKPIKKLIIKPKRNTEIKSENNFDSVFVGMLNTESHPPDDNQQTETERASVIATVNTEYDIDDKKDVKFSADGIGISLPESRKKTKLIKTYTKSSFKCDTCGETAKNESSYNEHLRIHPLECNLCGKYFYRRPNLQLHLKRHLGIKPYSCEFCQKSFLTKQKLDEHKNVHTGEAPIKCNMCNETFRRHSNLVQHRNRHHLHLKKKVKDYICYCGEILHSKKKLAWHKEIHDAKPKACLHCNEKFVHMASLTRHMRHAHNERFVPIEDRNNENVECPICKGVYLKSSLEVHIRNHSGQRPFTCSVCSKDFTTKWNLKLHKWTHAARATKPYKCDQCNGAFIRETDYVAHMNSHKSVRPYTCNHCGAQFIRKYNCQRHVKEHEKAKTFSCQVCGKSFHRSYYLKDHMRVHSGVRPFSCHVCGKTSTTKSNHNKHVMIHHAKEPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -