Ppec038687.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- Znf423
- Assembly
- GCA_036250285.1
- Location
- CM070082.1:13561515-13575547[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.053 9.2 8.3 3.3 3 23 37 57 35 57 0.97 2 22 1.5e-06 0.00027 22.6 5.3 1 23 63 85 63 85 0.99 3 22 8.1e-05 0.014 17.2 0.3 1 23 91 113 91 113 0.98 4 22 8.3e-06 0.0015 20.3 1.8 1 23 127 150 127 150 0.97 5 22 0.26 45 6.1 0.2 2 23 182 204 181 204 0.92 6 22 1.1 2e+02 4.1 0.1 1 20 245 264 245 265 0.93 7 22 0.0068 1.2 11.1 0.0 1 23 360 382 360 382 0.97 8 22 0.00012 0.021 16.6 0.0 2 23 397 418 397 418 0.94 9 22 1.5 2.6e+02 3.8 1.1 3 23 428 450 426 450 0.78 10 22 0.0081 1.4 10.9 1.8 1 23 455 478 455 478 0.96 11 22 7.4 1.3e+03 1.6 0.6 1 23 485 508 485 508 0.79 12 22 0.58 1e+02 5.0 5.0 1 23 542 565 542 565 0.95 13 22 0.13 22 7.1 0.5 1 23 622 645 622 646 0.94 14 22 0.00029 0.052 15.4 4.4 2 23 657 678 656 678 0.97 15 22 0.063 11 8.1 0.2 1 23 687 709 687 709 0.91 16 22 0.17 30 6.7 1.2 2 23 717 738 717 738 0.96 17 22 6.6 1.2e+03 1.7 0.2 1 13 784 796 784 798 0.85 18 22 4.3e-05 0.0076 18.0 1.0 1 23 847 870 847 870 0.96 19 22 0.089 16 7.6 0.8 1 23 877 899 877 899 0.95 20 22 0.0023 0.4 12.6 0.3 1 23 907 929 907 929 0.97 21 22 0.34 59 5.8 1.8 1 23 936 958 936 958 0.94 22 22 2.7 4.7e+02 3.0 0.1 3 21 990 1007 988 1007 0.82
Sequence Information
- Coding Sequence
- ATGATATTCACAGAAAAATTGGCCAAAACGTATACTCTTTGCTTCCAGCCATCCACGCACTATCTGGATCAGTTTATACGATCTCACACGGACCAACTTCAATATGGATGTTCATATTGTCCTCGATTGTTTAAACACAAGCGATCACGTGATAGACATATTAAATTGCACACTGGAGACAAGAAGTACAAGTGCGTGCATTGTCAAACAGCTTTTTCTAGAAGCGACCATTTAAAGATCCATATGAAAACACATGATAACAGTAAACCGTTTCGTTGTTTAATTTGTAACAGAGGATACAATACAGCCGCTGCACTTACCTCTCATCAACAAAGTCATGCTAAGCAAAACTCTGAACGAGGACAAAGTCCTGGGACCTTTAAATGCCATCAGTGTCCTGAAatgtttacgagatacgatttatTGCAGCTTCACATGTCTTCGATACACGCAACGCTTGGAGTTACGTGCTCATCACAAAGTTTGTCTTCCATTCCACACCAAGAGGGTACAAACAAAGCTTTAATGGAATTGCCGAAATGGGTCTGCATGTATTGTGGAAGAGATTTTTTAACTATTGACGAAATGCAACATCATGTTAATCTAGACCACAGTGCAATTTTGAACGGAAATTTCACGGAAAACGCCTGTAAACCAATCGCATCTTCCGAAAGATCGTCTCCGTTAAACGATAAATCCTCCCCTGTCCAAGAAAATAATAGCGCGCCAACATATGCTTGCGATAGTTGCACAATGCAATTTGATTCAATCGAAAAACTGCGGATACATGAAAATTGTATACATTGGAAGCCGCCGCAACCATTAATTTCAGCTCCCAGTTTATTTATGAAAGACTGCAATGCTTGCTTACCTCCTTCCCAAAGTATACCTACGGATATATTAAATACTTCTCCAAATTCGCAACCGGTGCAGTCACATCCCACAGATTTAAGTCGTAAACGTCGAGCTGGAGAAGTTGAAAATTCAATTGTCGCAAAACGGGAATCAACCGATTTAAATAATCAGAACGCAGCTAGTGGTTCACGGGATTCCGCCAAAAAAGAGGAATGGTCCAGTTATATTTGTAGCATCTGTGGAACTCAGTTGCCAAATTTTGCATCATTTATGGTTCACATGGACATACATATGTCTGTTAACGCTACGCCTACAAATGTAATATTAGGAGGATACTGTCCACTATGCGGGGAAGCTTATCGTGATCAAACTGAGCTCAACAACCATATTGTATTACACACACTGTCTTATAAACCAGGATGGTGCTGTCGAGtatgtaaaaaagtttttaatgaaGATCTGGAAGATTTACAAAgacatttaattgaaaatcacaCTTGTACTACGTATAGATGTTGCGTCTGTGAACAAATATTTGAGACCAAGTCGGCGATGCTTATACACCTCACAAAAAAGCATAGCAGTGAGTGCCAACATTACCGATGTAAGTTTTGTCCAGAACAGATATTTCATAACCAGATTAGCGCCGAAATGCACATAGCTCAGCACGTTCCACGCCTGTTTAATCCTTCACGCAAATCTTCAAGTTTTGGATCTTTTCCCTTTCGTACTGATTACAATGCAAGAGTAGATCGAATGGTTAAAAGCTTTCAATGCCCCTTTTGTCGACAGTGCTTTAAGGGAGAATACCTTCATCAGTTACACATGTTAAAAGAGCATAAAGACTACAGACAGGCGCATACTTTAAGAATGACTGAAGATTGTTCTTTGGATCAACGACCAACTAGAGGGCAACGAGAAGCTCCAGACAACTCTGGCGTGTTGTACCCCAATAACATATCCTCATCCGACAACATTTCGCGTTATGAGAGAAGTATCAACGAAAACTTCATATGCGACATTTGTGGCGCAACGGATTTTGGCAGCGAGACTGAACTAACCAGTCACAAAAAACTGCACCAcgttaaaacaaaaattggccCTGTAAGTCTTCAGTGCGCGTATTGTAATGAACACTGTAAATCAAGGTCAGATTTGGAAAATCACATGAAAAATCACCAAATAAACAGTAGCAAAGGTAAACACAAGTGTAACATTTGTGACGAAATTTATACTTCGGCCATCATATTGGCGGAACACAAACTCTCTCACTGTAAAATAGTGTCGGGTAACACGTGTACTCAGTGCAAAACCGTCCTAACAGACGAACAATCATTTTATTCCCATCAACTGCAACACAGTGCCGTCTTAAATAAGTCAAATTCGCAAATTTCCTTACCAGCAAACTGCATTATTTGCTGTCAAACGCTCCAAACTGACGTGGAAATTAAGCTACATTCAAATTTCCATTTGCAACACATCATTCACAAGGAATTTCTATGCAGTATGTGTAGTCGAATTTTCGACACACGCACTGGAGCGACTCTTCAGGGCTATGAAAAAAGTTCCGAAAATCTTCAAATTGCAATATGCAAGGAGTGCATGAACAAGTGTAGCAATAACAGTAGCTCGAGTAGTCCACGACTTTTAACGCAAACCACTGAAAACATAGATAAAAATATATACTCATGCACCAAATGTCCGAAAACTTTCGAAAATGAAAGCGAAGTGAAAAAGCACGCAACAACACAACACACAAGTGAGGGAACGAATCACGAATGCCACATATGCAGAAGTATCTTTCCAACCGCCCTAAAACTACAACTGCACGTGATAGAGCATAGTTTTTTTGGAACGGGACAATTCCGCTGTTACATTTGTAGTTCAATATTCACAACTGCAAACGGTTTACTTTCTCACATGCTAGAACATGGAGTAAACTCAAAACCTTACGAATGTGTAACAtgtcaaatgaaatttttctttcaaaCAGAACTCGACAACCACAAATATGAACATATACTCGTACGGACCATTCCTACGCCCATTCAaatgaattgtaaaaatgaCAGTGAAGACAcatcagaaaaaataaaaagggaaattttattttgcccTTATTGTGATATTTCGGCATCCCAAACTTATATGGAGATGCATATTAGGTGCTGCAGTCGAAATCCGGAGCTTAAAAGAAAACACGAAgaaaaacgtaaaattaaattcgcagagaataataataacacatcAACTTCCGAAGAAAAAAAGACCTAA
- Protein Sequence
- MIFTEKLAKTYTLCFQPSTHYLDQFIRSHTDQLQYGCSYCPRLFKHKRSRDRHIKLHTGDKKYKCVHCQTAFSRSDHLKIHMKTHDNSKPFRCLICNRGYNTAAALTSHQQSHAKQNSERGQSPGTFKCHQCPEMFTRYDLLQLHMSSIHATLGVTCSSQSLSSIPHQEGTNKALMELPKWVCMYCGRDFLTIDEMQHHVNLDHSAILNGNFTENACKPIASSERSSPLNDKSSPVQENNSAPTYACDSCTMQFDSIEKLRIHENCIHWKPPQPLISAPSLFMKDCNACLPPSQSIPTDILNTSPNSQPVQSHPTDLSRKRRAGEVENSIVAKRESTDLNNQNAASGSRDSAKKEEWSSYICSICGTQLPNFASFMVHMDIHMSVNATPTNVILGGYCPLCGEAYRDQTELNNHIVLHTLSYKPGWCCRVCKKVFNEDLEDLQRHLIENHTCTTYRCCVCEQIFETKSAMLIHLTKKHSSECQHYRCKFCPEQIFHNQISAEMHIAQHVPRLFNPSRKSSSFGSFPFRTDYNARVDRMVKSFQCPFCRQCFKGEYLHQLHMLKEHKDYRQAHTLRMTEDCSLDQRPTRGQREAPDNSGVLYPNNISSSDNISRYERSINENFICDICGATDFGSETELTSHKKLHHVKTKIGPVSLQCAYCNEHCKSRSDLENHMKNHQINSSKGKHKCNICDEIYTSAIILAEHKLSHCKIVSGNTCTQCKTVLTDEQSFYSHQLQHSAVLNKSNSQISLPANCIICCQTLQTDVEIKLHSNFHLQHIIHKEFLCSMCSRIFDTRTGATLQGYEKSSENLQIAICKECMNKCSNNSSSSSPRLLTQTTENIDKNIYSCTKCPKTFENESEVKKHATTQHTSEGTNHECHICRSIFPTALKLQLHVIEHSFFGTGQFRCYICSSIFTTANGLLSHMLEHGVNSKPYECVTCQMKFFFQTELDNHKYEHILVRTIPTPIQMNCKNDSEDTSEKIKREILFCPYCDISASQTYMEMHIRCCSRNPELKRKHEEKRKIKFAENNNNTSTSEEKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01518347;
- 90% Identity
- -
- 80% Identity
- -