Ppec007273.2
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- topi
- Assembly
- GCA_036250285.1
- Location
- CM070075.1:19400126-19407927[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00077 0.13 14.1 2.2 2 21 117 136 116 137 0.94 2 13 1.5e-06 0.00027 22.6 1.1 1 23 162 184 162 184 0.98 3 13 0.0094 1.6 10.7 2.0 3 23 192 212 191 212 0.95 4 13 0.0018 0.32 12.9 0.5 2 20 231 249 230 251 0.92 5 13 0.0017 0.29 13.0 3.3 2 21 307 326 306 328 0.94 6 13 0.24 41 6.3 2.3 2 21 371 390 370 394 0.83 7 13 0.046 8.1 8.5 0.1 1 23 496 519 496 519 0.97 8 13 0.0066 1.2 11.1 0.1 1 23 523 545 523 545 0.97 9 13 5.8e-07 0.0001 23.9 2.4 1 23 551 573 551 573 0.98 10 13 0.021 3.6 9.6 0.2 1 23 579 604 579 604 0.96 11 13 0.012 2 10.4 0.9 1 23 610 632 610 632 0.86 12 13 8.2e-05 0.014 17.2 0.3 3 23 640 660 638 660 0.98 13 13 9.3e-06 0.0016 20.1 0.4 1 23 666 689 666 689 0.98
Sequence Information
- Coding Sequence
- ATGTATAATATCGTAACTTTTAAAACTGCAATTGTACAAAATAAGAATTTGGTAACTACTTACGAGTGCGAACAAGATTTCCTTACTCAAGAAACTGTATCAAAATCGATAATTCCAAATGAAAATTTAGACTCTTTTATAGGAATTTTGTCAGATGGGAAGCTCAATTCAAAATATCTAGACGAAGGCAACGATCACGCTACCTACGTTAAAATACCTAGTGGTGCCCCGTTACAGTCCACAGGTATTACAGATTTTAATCCTCTCTTAATGGATTATAAGTTATATTCAAATAACGAATGTTATAAAATGCTACCGCTTGAAATTCTTAACATATCTGTGATGGTGAGATGTCAGAATTGCGATACCAATTTCCCAACGAAATATCAATATCAGAGACATCAATGCGATTTTAATGCTGAAAAAGTGGTTCTCAAACCTGACGCCGATTTGAAAGATGTAGACAAAGGTATGAGAATTAAGTATTCGTGTGCAACTTGCGGCAAACAATTTGTAAGCAAAAACAACTTGGAAAGGCATCAAACTAGTCACGAAAATATTCAAGAAAATATATGCGAGCATTgtaataaacaatttgttaGTGAAAACCGTCTTCGGATTCACAAAGAGAACCACTGTAAGAAAGCGGGAGACATATCAAAGTTTTATCGCAGTGATGTGACCGTGTGGAAATGTACTAAATGTAATCAAGTTTTCTCAACACCGACATCAGCTACACATCACACCGAAATTTGTCCAGAAATTAGTAACCTTAATAGTATCAAAATCGAGGACGAGTCCAATTCATCGAATACCGAATTAGAAAATTCCAAAAGTGATAACCAGTTCCCAGAGATGTCGAGGGAAATAcagttgaaaaatgaaaatgtaacaaaaattttaacagAATTGTTACTGCAATGTGAGTACTGTAATCGCACTTACGCTGATAGACATTTATTGTTAGCCCACCAAAAATGCCATACAACGCAAGTAAATTATGAATGCATCACTTGCAGTGGAATGTTTGACTCATACTTATCGGCAACGAGGCATTGGATGAGCAAATGCTCAGATGCGGCCAATTTATTTTATCTCCCAAAGATGACGTATTGTGAACTGTGCGATCGTACATTTAAGTCACACGAAATTCTATACACGCATAAAATTAAGAAGAAACACTACACCCCTAAACTTCACGTGGCCGTGAATCCTACTTTTACCGAAAGCAAAGAGGAAGCTAAGGATAATCTAGTGGAATTTTTCAAAACAGTATTAACAACCTTAGACACATCCACCGATAAGACCAAAAGTTATGCAGAACGGCCTGTTGAAGGTAAAGAAAATGAACCGATTaatgataatgaaaataatactgGAGTGGTTGAGGAGTCGATTAAAAAGAGACGTGGTCGTAAACGTAAATGGCCGAAACAGGACGCAAAAACAAAAAGCTTATCCTTTGTGGCTGATGAAGGTTATAAATATCAATGCGAACGTTGCATCATGGTATTTGATACTGTTGCTGAATTGGAAAATCATCGGGAAAAAGATCACGCGTCGAATTTTTCGTGTGAAGAATGCGGGCAGGTGGTTCATAGCGCCAAGGCTCTGGTAATCCACAGCAGAGCACATCAATGTTTAAAGCCGTACGTATGTGAACAGTGTGGAAGAAGTTATTCACAGACGTCTCATTTGTGGCAGCATATGCGTTTTCATCAAGgaATAAAACCATTTGCTTGTCCACATGAAGGCTGTGAAGCACGTTATACTATACGTCCAGATTTAAAGGATCACATCCGAAAAGTTCATACACGCGAACGACCGTTCAAATGTACAGTGTGTGGAAAGAGCTTTCTCACTGGATCAGTTTATTACCAACACAGACTTATTCACACAAATGATAGAAGATATGGTTGTGATATTTGTGCCAAGCGATTTTTCCGTGCTGATGCATTAAATAATCATCGTCGAATTCATACTGATGAAAGACCTTATCCGTGTGTGATTTGTGGTAGAGAATTTCGCCAAAAGGGTGATAGAAATAAACACGTTCGCACCCAACACCCCGAGTGA
- Protein Sequence
- MYNIVTFKTAIVQNKNLVTTYECEQDFLTQETVSKSIIPNENLDSFIGILSDGKLNSKYLDEGNDHATYVKIPSGAPLQSTGITDFNPLLMDYKLYSNNECYKMLPLEILNISVMVRCQNCDTNFPTKYQYQRHQCDFNAEKVVLKPDADLKDVDKGMRIKYSCATCGKQFVSKNNLERHQTSHENIQENICEHCNKQFVSENRLRIHKENHCKKAGDISKFYRSDVTVWKCTKCNQVFSTPTSATHHTEICPEISNLNSIKIEDESNSSNTELENSKSDNQFPEMSREIQLKNENVTKILTELLLQCEYCNRTYADRHLLLAHQKCHTTQVNYECITCSGMFDSYLSATRHWMSKCSDAANLFYLPKMTYCELCDRTFKSHEILYTHKIKKKHYTPKLHVAVNPTFTESKEEAKDNLVEFFKTVLTTLDTSTDKTKSYAERPVEGKENEPINDNENNTGVVEESIKKRRGRKRKWPKQDAKTKSLSFVADEGYKYQCERCIMVFDTVAELENHREKDHASNFSCEECGQVVHSAKALVIHSRAHQCLKPYVCEQCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCTVCGKSFLTGSVYYQHRLIHTNDRRYGCDICAKRFFRADALNNHRRIHTDERPYPCVICGREFRQKGDRNKHVRTQHPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -