Ppec041288.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070083.1:12895870-12898722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.082 14 7.7 0.4 2 20 53 71 52 71 0.94 2 29 0.039 6.8 8.7 0.5 1 23 79 101 79 101 0.98 3 29 0.0065 1.1 11.2 3.2 1 23 107 129 107 129 0.98 4 29 0.011 1.9 10.5 4.2 2 23 135 156 134 156 0.96 5 29 0.21 36 6.4 3.1 2 23 172 193 171 194 0.94 6 29 0.082 14 7.7 0.6 1 23 200 222 200 222 0.95 7 29 9.3e-05 0.016 17.0 3.5 1 23 255 277 255 277 0.98 8 29 0.56 98 5.1 2.4 1 23 282 304 282 304 0.97 9 29 0.073 13 7.9 2.6 3 23 312 332 311 332 0.98 10 29 0.0051 0.9 11.5 9.0 1 23 338 360 338 360 0.99 11 29 0.005 0.87 11.5 1.5 1 23 372 394 372 394 0.96 12 29 0.004 0.7 11.8 1.9 2 23 399 420 398 421 0.93 13 29 0.12 20 7.2 1.2 2 23 441 462 440 462 0.92 14 29 0.01 1.8 10.6 1.1 1 23 468 490 468 490 0.97 15 29 0.0019 0.34 12.8 0.2 1 23 494 517 494 517 0.96 16 29 0.39 67 5.6 1.0 1 23 535 557 535 557 0.94 17 29 0.069 12 7.9 2.3 2 23 564 585 563 585 0.93 18 29 0.00081 0.14 14.0 0.6 2 23 591 612 590 612 0.96 19 29 0.0001 0.018 16.8 1.6 2 23 618 639 617 639 0.97 20 29 0.088 15 7.6 0.1 3 23 647 667 645 667 0.97 21 29 0.049 8.6 8.4 7.5 1 23 673 695 673 695 0.97 22 29 5.4 9.5e+02 2.0 6.8 2 23 702 723 701 723 0.90 23 29 0.18 31 6.7 0.8 2 23 731 753 730 753 0.95 24 29 0.0058 1 11.3 1.0 2 23 763 784 762 784 0.96 25 29 0.35 61 5.7 3.4 2 23 791 812 790 812 0.96 26 29 0.0022 0.39 12.6 4.0 1 23 819 841 819 841 0.96 27 29 0.002 0.34 12.8 1.5 1 23 847 870 847 870 0.96 28 29 0.00041 0.072 14.9 0.9 2 23 877 898 876 898 0.97 29 29 0.00013 0.023 16.5 1.7 1 23 904 927 904 927 0.96
Sequence Information
- Coding Sequence
- ATGGCTCAACCACCAATTACAATTAAAACCGAAGTAGATAGCGAAGAGGATATTAAGCCGAAAATTATCTCGGAGGGTACCTTGAAAGATGTTAAAGTGGAACCATTAATTACCGACGAAATCGATCTGAAAGTGATCGAAATACGTGTAGAATTAATATGTCACAAGTGTTGGTTTCGTACGTTTAATAAGGAGGAATTGATCGCTCACATGCCCGTATGCGACGGTAAACGTTACAAATGTAACATTTGCGAGTTTAAAACGGCATATAAACCCGTATTTAAGATTCACATCGCCCGACACTTGGGCGAACGTAATTTCCACTGTAACGAGTGTAGTTATAAGGCGTATTCGACGTCGAAATTAAATGTACACATGCAGACGCATTCGAAGGACGTGCTACAGTGTTATCACTGCAAGTATACGACGAATTCGAAACGTAACTTGAGATATCACGTCGCGAAGCACAGGAATATTCAACGTCATCGGCTGGATCACACGAAACCGTCGATTAAATGTAATCGGTGCTATTACCAAGCACGGAaccgttatttattaaaaaaacacgtGGTGAAGCATCACGATAAGGTTAAGTTGCACGCTTGCGATCAATGCCCGTTTAGGGCCTACGACCGTGCCGTCTTAAAACGTCACATGTTCGTTCATTCTAATAATTTTCTGTATTGTGACAAGTGTAGCTATAAATCGTTGTATAAGGCAAGACTCGTACGTCACGTACAGCATCACGGTTTAAAGCCCATATTTAAGTGTACCAAGTGCGATTATTCCACGAAAACGAAGGCTTTGTTAAAACAACACGAAAAGAAACACACTCGTCGCAATTTTAAGTGTAATCAGTGTACGTTCGCCACTCGCTGGCAACATTTACTGTTAATCCACCAAGAGAAGCATGTCGTTACTAAAAATCGATGTTGTCCCCTGTGTGCTTACAAGACTTCTAATAAACAACGCTTGTTGGATCATTTACGTACTCATTTCAAGCCTGAAAAGTATCAGTGTCACGATTGCACTTATCATACGTTTAGTAAGGCGCATTTCATGCGACATATGAAGGTACATAAGTCGGTCATCGCGCCGCCAAGTGCACAGTCGTTCAAGTGCGGTGACTGTGATTATACGACACCCATTAAGTACCATTTACGAATTCACTCGTTAAATCATCGACAGAGTTTAAATTGTGACACGTGCGCTTACAAGACTTATTATCCGGGCTTATTGAAACGTCACCAACGTACCCATCACTTAAAAACATCCGCTCCACCTAAAGTTCGCACGAAATTGCGGCGTAACAATAATCTAAAGTGTGATAAGTGCGATTTTTCGACGAGTCGATCGTTCGTTTTACTGGTACACAAGTTTCTACATAATAAAGTGCAGAAATTCGTCTGCACTCTGTGCGGTTATAACACGTTTCACCGAAACGATTTGGTCGATCATCTGGTTACGCACGCTGTCGGTTATAAGTGCGGTATTTGCGACTACACGGCAAGGACGGAAGGTGATCTCCGTTTACATTCCGAAACACGTCACGCAAAGACCGCTACAAAATTGAGgctacaattaaaaaaagttcaaaaggtGTACACGTGCGAAATATGTAAGTATAAGACGGAATCGAAGAAAATATTCGATCGACATGTTCTCGTTCACCAGTATGAGAAGAAAATTTCGTGTCAACTGTGcaattatcaatgtaaaacCGACGAACAGCTACAAAGACATTCGCTACTCCATACGAGTCGAAACTTGAAATGTCCAGAGTGCGAGTATGTCACATCGCAAATGAAGTACCTGAACAGGCACTCCAAGATTCATTCCAACACGATTTTAAAATGCGACCAGTGTGACTACACGACTAAGTACGCGGAAAATTTGAAAAGCCACCGACGAAATCATTCGGACGAAAAACCATTCGGTTGCGTAATGTGCGGGGCCAAAATGAAAACCAAGGCCGGTTTACGTGGTCACATAATGACGCACGTTGTGTTCCGCAATTTTCACTGCGACCGGTGCGACTACAGTACACGAAATGAAACTTGTCTAAAACGGCATAGGCTAAAACACAACGTTTCGAAATTACTGTCGTGTAACCAATGTGATTATAAAACCCACAACAAGGACAGACTAACGAAACATTGTTACACGCACTCTTCGATTCGACAACCAATCCAATGCGACCGTTGCGATTACAAAGCTTACACAATGGGCACATTACGATACCATTATCGTTACCAACACCTGCCGCGAGCTGAAACCGATTACTTGTACTGCGCCGACTGTGAGTACAAGACTTATCGAAAATCCGGCATGAGATCCCACGTCAGAAGGCACTTTAAAGTCAAGAACGTCAAATGTGGCGACTGTAATTTCACCACCAACCACCAGCACAGCATTAAAATCCACGGCTTGAAACACGACGACATCAAACACTGGTTTGAATGTTCCGAGTGCGATTATAAAACTCAACATAAAGGTAACTTGAAGAAGCATAAGGTTAAACATACGGGTAAGAAGGATTACCAGTGCGATCAGTGTCCTTACAAAGCGACACAGAGCAGTTCGTTGTCGActcataaaaaattgaaacacgCGGTGGTTGTTTATCTCAAATGCGAGAAGTGCAGTTATAAGACTGCGCTGAAAGgtaatttaaagaaacatatGTTGGTACATACGGGCGAGAAACCGTTCGCGTGTACCCATTGCGATTATAAAGCGAGTCAGAATAGTGCCTTAAAAACTCACATTAAAATTAAGCATTCTAAGCTAGAGGTATAG
- Protein Sequence
- MAQPPITIKTEVDSEEDIKPKIISEGTLKDVKVEPLITDEIDLKVIEIRVELICHKCWFRTFNKEELIAHMPVCDGKRYKCNICEFKTAYKPVFKIHIARHLGERNFHCNECSYKAYSTSKLNVHMQTHSKDVLQCYHCKYTTNSKRNLRYHVAKHRNIQRHRLDHTKPSIKCNRCYYQARNRYLLKKHVVKHHDKVKLHACDQCPFRAYDRAVLKRHMFVHSNNFLYCDKCSYKSLYKARLVRHVQHHGLKPIFKCTKCDYSTKTKALLKQHEKKHTRRNFKCNQCTFATRWQHLLLIHQEKHVVTKNRCCPLCAYKTSNKQRLLDHLRTHFKPEKYQCHDCTYHTFSKAHFMRHMKVHKSVIAPPSAQSFKCGDCDYTTPIKYHLRIHSLNHRQSLNCDTCAYKTYYPGLLKRHQRTHHLKTSAPPKVRTKLRRNNNLKCDKCDFSTSRSFVLLVHKFLHNKVQKFVCTLCGYNTFHRNDLVDHLVTHAVGYKCGICDYTARTEGDLRLHSETRHAKTATKLRLQLKKVQKVYTCEICKYKTESKKIFDRHVLVHQYEKKISCQLCNYQCKTDEQLQRHSLLHTSRNLKCPECEYVTSQMKYLNRHSKIHSNTILKCDQCDYTTKYAENLKSHRRNHSDEKPFGCVMCGAKMKTKAGLRGHIMTHVVFRNFHCDRCDYSTRNETCLKRHRLKHNVSKLLSCNQCDYKTHNKDRLTKHCYTHSSIRQPIQCDRCDYKAYTMGTLRYHYRYQHLPRAETDYLYCADCEYKTYRKSGMRSHVRRHFKVKNVKCGDCNFTTNHQHSIKIHGLKHDDIKHWFECSECDYKTQHKGNLKKHKVKHTGKKDYQCDQCPYKATQSSSLSTHKKLKHAVVVYLKCEKCSYKTALKGNLKKHMLVHTGEKPFACTHCDYKASQNSALKTHIKIKHSKLEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -