Ppec033089.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070080.1:23903534-23907310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0077 1.3 10.9 0.0 2 20 34 52 33 53 0.93 2 13 2.2 3.9e+02 3.2 0.3 1 12 133 144 133 153 0.87 3 13 0.047 8.2 8.5 2.0 1 21 223 243 223 244 0.94 4 13 1.5e-05 0.0027 19.5 0.7 2 23 252 273 251 273 0.98 5 13 0.00012 0.021 16.7 0.8 1 23 283 305 283 305 0.98 6 13 0.00014 0.025 16.4 1.8 1 23 361 383 361 383 0.96 7 13 0.002 0.34 12.8 0.2 1 20 389 408 389 410 0.95 8 13 1.6e-05 0.0027 19.4 2.3 1 23 417 439 417 439 0.98 9 13 5.6e-07 9.8e-05 24.0 4.8 1 23 445 467 445 467 0.98 10 13 0.00078 0.14 14.1 7.4 1 23 473 495 473 495 0.99 11 13 4.9e-05 0.0085 17.9 0.5 1 23 501 523 501 523 0.98 12 13 2e-05 0.0035 19.1 0.2 1 23 527 549 527 549 0.98 13 13 0.0001 0.018 16.9 0.2 1 23 557 580 557 580 0.96
Sequence Information
- Coding Sequence
- ATGGGTACTTTACAGTTACATTGTCCACTTTGTTGTTCAGAAACATTTTCATGTCACAACTCcttaaaatatcatttattAAGCATATCAGAAAATTTAATATGTCCCTCGTGCGGTAAAAGGTTCGAACGTATTTTTGATCTCGCTATGCACCTCGGAAACCAATGTGTCGATCCATTATCCGAACCAGATGTGGCGGCAGAAGAGAAATATGCAAATATTGAATCAGAACAAGTTACAGTAACTCCAATTTGTGTCAAAATAGAAAACGACAATGCAACTAATACCGTCACAAGCAGTATACTAGCAAGAGCACTTACAAAAGATACGGTTGACGATAATAAAAGTTCAGATCAACATCAAAATCAAGAAGATGGATCAGATAACGAGGACCTTTATGTTTGCTCCACTTGTGATGTTCAGTTCAATTCAATTGAAGAGCATATTAAGGAGTTTCATGATGGACACGAAGTTTATATACAGAAtgacaaagatgaagaagaagaagacgaagaaattcatttgaataaaaatggaTTAATGTGCACTCAAAAACTGGTAAAAATAGAAAAGTTTTGGGATAATAAAACCGGAGAATCTGATGAAGTGGCAGAAGAAAATGATGTCGAATTCGACGAAGAAGGAAATGAACCTGTTGTCAAAATTTACGAATGTTCAAAGTGCTTGTTGGGCTTTCCCACTGAAGATTcgtttaataaacataaatgcaaaaatgcaaatttcgtAATGAAGAAATGTACTGTATGCGATGCAAGTTTTTCaacagtaaaattattaaatgtgcACATGAAATCGCATGGCATTAGGGAACACGCAAATCCGCCTTTTATATGTGAAGTTTGCAATACCGAATTCCCCTCATTTAAGTCATTGCGTTTACATAGACGAATGCATGATCCTATTAAATCAAAGAGCATCGAACCTCCAGTTAACTATGGTTTGGAAGGTGAAGAAGTGGAAGATTCATCTAGAGAAAAATTTATGTGTGTGatatGTTGCAAAGAGTATGACAAAGAATATGCAGAAGCGCATCAAAAATTTCACAGTGAGGAAAAGGACTATAACTGTGGAATTTGTAATCGTAAATTTTTCACACAAGAGAACTTGGATATGCACATGCACGCTCATGCGGAAGTTAAAAAATTTACTTGTTCGTACTGTAAAAAAGGCTTTCTAAGTAATGACAAACTGGAAGCACATATATCGGCCCAATGTCAAATGCGACAGTACGAATGTCAATATTGCGGAAGACGTTTTTCTCGCCCGCACGAGAAAGTCAAACATGAACGTATACATACAGGCGAAAAACCACATCAATGCGAAATTTGTGGTAAAACTTTTCGTGTTAGTTATTGTCTAACACTTCACATGCGAACCCATTCCGGAATAAGACCGTATAAATGTGACCATTGCGGGAAACGTTTCAAAGCGCATAGTGTTTATAATCACCATTTACTGACACATTCCGAAGATAGGAAATATAAATGTCCATTTTGTCCTAAAACATTTAAAACTGGAGTGCAGTTAGCGGGACACAAAAATAGTCACACGAAACCTTTCACTTGTACGGAATGTAACAGACCATTTGCATCTTTGTACGCAGTTCGATCACACATGGCTACTCATAAAAGGCAGAATAACTTAAAATTCAAATGTTGGCTATGTGGAGCATCCTATGCACGTTCTTTTGCGCTGCGTGATCACATTAAGGAACAACACTTTGATGATGCAAAAGACTCTCCCCAATTGGATAATATGGATTTTGCGATGAACGAAACAATTGAAACAGGAGAGTCTATATTAACAGATGGAGATGAAACCATGTTGATTGATATGCCAGACGGAGAAGATGTAAACAGTTTGGAAATTTCTGAAGTTGCAATTACTCTATCAGATAACAATTAG
- Protein Sequence
- MGTLQLHCPLCCSETFSCHNSLKYHLLSISENLICPSCGKRFERIFDLAMHLGNQCVDPLSEPDVAAEEKYANIESEQVTVTPICVKIENDNATNTVTSSILARALTKDTVDDNKSSDQHQNQEDGSDNEDLYVCSTCDVQFNSIEEHIKEFHDGHEVYIQNDKDEEEEDEEIHLNKNGLMCTQKLVKIEKFWDNKTGESDEVAEENDVEFDEEGNEPVVKIYECSKCLLGFPTEDSFNKHKCKNANFVMKKCTVCDASFSTVKLLNVHMKSHGIREHANPPFICEVCNTEFPSFKSLRLHRRMHDPIKSKSIEPPVNYGLEGEEVEDSSREKFMCVICCKEYDKEYAEAHQKFHSEEKDYNCGICNRKFFTQENLDMHMHAHAEVKKFTCSYCKKGFLSNDKLEAHISAQCQMRQYECQYCGRRFSRPHEKVKHERIHTGEKPHQCEICGKTFRVSYCLTLHMRTHSGIRPYKCDHCGKRFKAHSVYNHHLLTHSEDRKYKCPFCPKTFKTGVQLAGHKNSHTKPFTCTECNRPFASLYAVRSHMATHKRQNNLKFKCWLCGASYARSFALRDHIKEQHFDDAKDSPQLDNMDFAMNETIETGESILTDGDETMLIDMPDGEDVNSLEISEVAITLSDNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -