Basic Information

Insect: Pyrocoelia pectoralis
Gene Symbol: -
Assembly: GCA_036250285.1
Location: CM070081.1:30828281-30829366[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0013 0.22 13.4 2.2 1 23 54 77 54 77 0.96

2 9 4.9e-05 0.0086 17.9 1.8 1 23 83 105 83 105 0.97

3 9 2.8e-05 0.0049 18.6 0.5 1 23 113 136 113 136 0.97

4 9 3.8e-07 6.6e-05 24.5 1.3 1 23 142 165 142 165 0.97

5 9 4.3e-06 0.00075 21.2 2.1 2 23 171 192 170 192 0.97

6 9 5.4e-06 0.00094 20.9 0.2 1 23 231 253 231 253 0.98

7 9 3.3e-05 0.0058 18.4 2.0 1 23 259 281 259 281 0.97

8 9 4.3e-07 7.5e-05 24.3 3.7 1 23 287 309 287 309 0.99

9 9 1.7e-07 3e-05 25.6 2.9 1 23 315 337 315 337 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0013	0.22	13.4	2.2	1	23	54	77	54	77	0.96
2	9	4.9e-05	0.0086	17.9	1.8	1	23	83	105	83	105	0.97
3	9	2.8e-05	0.0049	18.6	0.5	1	23	113	136	113	136	0.97
4	9	3.8e-07	6.6e-05	24.5	1.3	1	23	142	165	142	165	0.97
5	9	4.3e-06	0.00075	21.2	2.1	2	23	171	192	170	192	0.97
6	9	5.4e-06	0.00094	20.9	0.2	1	23	231	253	231	253	0.98
7	9	3.3e-05	0.0058	18.4	2.0	1	23	259	281	259	281	0.97
8	9	4.3e-07	7.5e-05	24.3	3.7	1	23	287	309	287	309	0.99
9	9	1.7e-07	3e-05	25.6	2.9	1	23	315	337	315	337	0.99

Sequence Information

Coding Sequence: ATGATTGATCTAACTTCTTGTATTTATAGGGCTGTATCTGAACAAGAACCACCGGTGTCTTTGAGAAAGCAAGAACCGACCAATATTACTGACACATCTCCACCACAACTGTCCAATAATCCAACATGGTATTTCGTCACTGCGAAAATATCGACGAATTTTTACTGCTCAATTTGCAAAAAGCTTTTCCCATCCAAAGAGCCTTTTACTCGCCACAATCGTTACAATCACTCCCAGAACCGAAAACACTCCTGTAAAATATGTGGGAAACAGTTTGTTTACCAATACGAAGCGAAAAAACACGAGAACGTTCACATCCCTAAGATAAAAAGAATATTTGAGTGTAATATTTGCAACAACTCCTACAGAAGTAAGACCACCCTTCAAATACATGTACAAGTTGATCACTACAACGTCATCAGATTCTCATGCAAGGAATGTGGGAAAAACTTTAAGTCACTGGCGTCATTAAAATCCCACCAGAATAAGGTTCACTTGGGAATGACCTTGAAGTGTGAGGACTGTGGTAAGGCTTACAGGGACGCATCGTGTTTTGAAAATCATAAGAAAACTCATCTCCCGAATTATGTTCGAGAAAAATTTACGTGTTCTGTTTGCCAAACCCAGTTTTTGTGCATGAAAACATACAAACAACATGTAAGCGCTCACGTCACTGGACCAAAGGCGAAATACATCTGTGACATTTGCGGTATGTCAATCACGTCCAGGGAGAGTCTAAGAACCCACCTTCGGTCCCATACAGGAGAAAAACCGTTTAATTGCCATGTATGCGATAAGGCGTTTTCCGCCAAACGATTTTTGAGAACGCATTTATTGGTGCACACCAAGGAAAAACCTTATTCCTGCGATTATTGTAAGCAACGTTTTTCACAGCGTTCCTCTCTCACCACTCATCTGAGGCGCCATACAGGTGAACGTCCCTACGAGTGTAATATTTGTAACAAGTGTTTCATATCTAAAACACTCTTAGTGAGCCACATGAAGACACATAAGATCTGTCCGCCGCCTTCCAAATCACTTAGTGATACCATATCACCATTAACAAACAGTAAATTGTTAAactga
Protein Sequence: MIDLTSCIYRAVSEQEPPVSLRKQEPTNITDTSPPQLSNNPTWYFVTAKISTNFYCSICKKLFPSKEPFTRHNRYNHSQNRKHSCKICGKQFVYQYEAKKHENVHIPKIKRIFECNICNNSYRSKTTLQIHVQVDHYNVIRFSCKECGKNFKSLASLKSHQNKVHLGMTLKCEDCGKAYRDASCFENHKKTHLPNYVREKFTCSVCQTQFLCMKTYKQHVSAHVTGPKAKYICDICGMSITSRESLRTHLRSHTGEKPFNCHVCDKAFSAKRFLRTHLLVHTKEKPYSCDYCKQRFSQRSSLTTHLRRHTGERPYECNICNKCFISKTLLVSHMKTHKICPPPSKSLSDTISPLTNSKLLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01285000;
90% Identity: iTF_01285000;
80% Identity: -