Basic Information

Insect: Pyrocoelia pectoralis
Gene Symbol: -
Assembly: GCA_036250285.1
Location: CM070081.1:13978132-13983379[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.6e-06 0.00045 21.9 1.7 1 23 241 263 241 263 0.98

2 9 2.5e-08 4.4e-06 28.2 1.6 3 23 271 291 269 291 0.98

3 9 0.00019 0.034 16.0 0.4 1 23 297 319 297 319 0.98

4 9 1.5e-06 0.00026 22.6 1.1 1 23 325 347 325 347 0.99

5 9 1.9e-05 0.0033 19.2 1.7 2 23 463 484 462 484 0.96

6 9 2.4e-09 4.2e-07 31.4 1.6 1 23 490 512 490 512 0.98

7 9 0.00055 0.096 14.6 0.6 3 23 520 540 518 540 0.97

8 9 8.1e-05 0.014 17.2 0.9 1 23 546 568 546 568 0.99

9 9 0.016 2.8 9.9 0.8 1 23 574 598 574 598 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.6e-06	0.00045	21.9	1.7	1	23	241	263	241	263	0.98
2	9	2.5e-08	4.4e-06	28.2	1.6	3	23	271	291	269	291	0.98
3	9	0.00019	0.034	16.0	0.4	1	23	297	319	297	319	0.98
4	9	1.5e-06	0.00026	22.6	1.1	1	23	325	347	325	347	0.99
5	9	1.9e-05	0.0033	19.2	1.7	2	23	463	484	462	484	0.96
6	9	2.4e-09	4.2e-07	31.4	1.6	1	23	490	512	490	512	0.98
7	9	0.00055	0.096	14.6	0.6	3	23	520	540	518	540	0.97
8	9	8.1e-05	0.014	17.2	0.9	1	23	546	568	546	568	0.99
9	9	0.016	2.8	9.9	0.8	1	23	574	598	574	598	0.95

Sequence Information

Coding Sequence: ATGGCAATCAATTTTTCAGCATCTTTTGCTGCCTGTCTGGCGGCCGGACTGAAAGTTCCCAGACAAATAATGTACTGCATTTCTCAAGATACCGGAGCACCTTATGTCCTTTATAAAGATGGCATGGATCGTACACAAGCGCAATGGGGAGTACACGACAATTACGGTGCTCCGCAACAAACTTCGTCAGGTGCCGCAAGTCCTCAACAGGCTTGTGGCCCCACCGTACCTCTTGGTATCGAAGCAGATTCAGTACCACCACGTGATCAAAGCTTACCATCGCCCGCACCCTCACCGTATCCAGCTGCGCAAGCTGAACCACGCGAAGATGATATACAACCGGAAGCACCTTCAATGGATTTGGAACCGAGACCATCATCACAATGTTTTGCCTCAGATCTTCAACAACCGCCGCCTCCCCCACAACCTCAGCCTCAACAATCCGCATATCATCAATATTCAAGGCTACCACCATCCAACGCTCCTCCGCCCGTACCTCCACACATGCTTGGCGCCGGTAGTTTTTCCGCATTGCATTATTTAAAACAACCCGGAGTTATGTTAACATCTTTGGGCCAAGAAAACAATGGACCCGTTGACCAATACACCAGCAGTATGCAAGATTTACGTGCGGCTACACTACCTGATGTCATTCAACAACATCAACACCAAATTGGAATCAAACAACATAAAAACAATTTGGGTGGAGAACTTCGACTCTTCAAGTGCCTAACTTGCGGAAAAGACTTTAAACAGAAATCAACCCTTTTGCAGCACGAGCGAATCCATACTGACAGCAGACCTTACGGTTGTCCAGAATGTGGAAAACGTTTTCGTCAACAGTCCCATCTCACTCAACATCTTCGTATCCACGCCAACGAGAAGCCGTACGCTTGTGTCTACTGCGAACGTACATTCAGACAGCGCGCGATCCTCAATCAGCATCTGCGCATTCACTCCGGTGAGAAGCCATATGAATGCCCAGAGTGCGGGAAGCATTTCCGCCAGAAGGCCATCCTCAATCAGCACGTCCGCACACACCAAGACGTAAGTCCGCATTTGGTCTTTAAAAATGGCTTGAATCCAACTTTATGGCCTCAAGACGTCCCGTTTCCGCCAGATGAAGGGAAAGAAGAAGTGACGTCGACGTACGGGGATGGCGATGCGAACGCGACTCCGCATGATAGATCCAGTTGCTTTTCGCCAGGGAGTATAGCGAGCAATTTACAGTACCCCGCGTATTTTAAAGATGCCAAAGGTATAAATCATTCTGTATTTGGGGCTGCTGCTAATTTTGGAGCGTTACAATATCTCAAACAAGGGCAAGGTGGTAAATTACCAGATGTTATACAACACGGTAGGTCGGCTGGGATGCCTTTGTATGTAAGGTGTCCTATTTGTCAAAAAGAATTCAAACAAAAGTCCACACTTTTACAACACGGTTGTATACACATCGAATCAAGGCCGTATCCATGTCCGGAATGTGGAAAACGGTTTAGGCAGCAATCGCATTTAACACAACACCTTCGGATTCACACTAACGAGAAACCTTATGGTTGTGTATATTGTGGTCGAAATTTTCGACAGCGAACTATTTTGAATCAACATTTACGAATTCACACAGGCGAAAAGCCTTATAAGTGTGGGCAGTGTGGGAAAGATTTTAGGCAAAAGGCAATACTGGATCAACATACGCGTACACATCAAGGAGACAGGCCGTTTTGCTGTCCTATGCCTAATTGCAGACGGCGTTTTGCAACTGAGCCAGAAGTTAAGAAACATATAGATAATCATATGAATCCGCACGCGGGAAAATCGCGGAGAAATTCGACCGGTTCTGATACTAGTAAACAAACAACGCCTAATGGAATATTGCCTAGAGGATTAACCCCCACCAGTGTTGTCAAACCAGAATTATATTTTCCTCAGTGTTACGCGCCAAGTTTTAATCCACCCAGTAGTGTAACACAATTTCAAAGCCCCACTTCCGAATATAAGACTCCTAATGGATTGCCGGCTCAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQIMYCISQDTGAPYVLYKDGMDRTQAQWGVHDNYGAPQQTSSGAASPQQACGPTVPLGIEADSVPPRDQSLPSPAPSPYPAAQAEPREDDIQPEAPSMDLEPRPSSQCFASDLQQPPPPPQPQPQQSAYHQYSRLPPSNAPPPVPPHMLGAGSFSALHYLKQPGVMLTSLGQENNGPVDQYTSSMQDLRAATLPDVIQQHQHQIGIKQHKNNLGGELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGLNPTLWPQDVPFPPDEGKEEVTSTYGDGDANATPHDRSSCFSPGSIASNLQYPAYFKDAKGINHSVFGAAANFGALQYLKQGQGGKLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAGKSRRNSTGSDTSKQTTPNGILPRGLTPTSVVKPELYFPQCYAPSFNPPSSVTQFQSPTSEYKTPNGLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330021;
90% Identity: iTF_00153828;
80% Identity: -