Ppec013179.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- TY3B-I
- Assembly
- GCA_036250285.1
- Location
- CM070075.1:51564098-51594255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.41 71 5.5 0.1 2 23 174 195 173 195 0.96 2 17 2.5 4.4e+02 3.0 1.8 1 23 574 597 574 597 0.68 3 17 3.7e-05 0.0064 18.3 0.8 1 23 602 623 602 623 0.98 4 17 0.00014 0.025 16.4 0.4 1 23 629 651 629 651 0.98 5 17 2.5 4.4e+02 3.0 1.8 1 23 988 1011 988 1011 0.68 6 17 3.7e-05 0.0064 18.3 1.1 1 23 1016 1037 1016 1037 0.98 7 17 0.0002 0.036 15.9 0.5 1 23 1043 1065 1043 1065 0.98 8 17 2.3e-06 0.00041 22.0 0.3 1 23 1071 1093 1071 1093 0.98 9 17 0.26 45 6.1 0.7 2 23 1100 1121 1099 1121 0.94 10 17 2.3e-05 0.004 18.9 1.1 1 23 1134 1156 1134 1156 0.98 11 17 0.041 7.1 8.7 2.5 1 23 1161 1183 1161 1183 0.94 12 17 0.042 7.3 8.6 2.4 2 23 1196 1217 1195 1217 0.96 13 17 9.1e-05 0.016 17.0 2.7 1 22 1222 1243 1222 1243 0.96 14 17 0.019 3.4 9.7 0.2 1 23 1250 1272 1250 1272 0.95 15 17 0.0038 0.66 11.9 1.8 1 23 1278 1300 1278 1300 0.97 16 17 1e-06 0.00018 23.2 0.1 1 23 1306 1328 1306 1328 0.99 17 17 2.9e-05 0.005 18.6 1.4 1 23 1334 1357 1334 1357 0.97
Sequence Information
- Coding Sequence
- ATGAAGGTGAATAATACGGACACCGTACAAACTTCAGAGGAGGAAGAGCCAGTAGTAAATTATGTACCACAAATCGTGAGCAGAATGGAAGGCATCGAACAGCCTCTGTTACTCGATACTGGAAGTTCGGTAAATGTAATGTCCTCTAGTCTATTTGAAGAAATTCTGGGAAGAAATCCCAAGATATCGATTTTACCGGCTGTGGGGCTATCAATACAAGGAGTCACAGGGAGGATCAGTAAAGTAAAGAAACAGGCCTTAATTCCAGTAGAAATTGGGGAAACAATTCACcagattatatttttaattgtcgACAACTTACACATCCCAGGTATACTAGGAATGGAATGGATGTCCGCAAAGAAAgccaaaattaatttacaaaaggaACAATTCGAATTTAGCTTAGAAGAAAAGGAAATTGTAGTACCATTCATGAAAAGGCAAGAAGAGGCCAATAAATCGTTGGAATTGACATTAGTACGAGGTACCGAAATGCCAATGGAGGTACAAAACCTTAAGTGCCCTATTTGCCCAGCGAGATTACCAATTAAATCAGTGTTTGACAACCACATGAGTCGCCATGATACAAAGGAAGTTAATATTATCAACTTCGACACTTCACTGGCTAAAAGAATAATCGAGAAGAATGAGGAAGCCTTTTCGGATACACCAGGCGGGTGCCGGAAGTACGAATGCAAATTGAATATCGGAGACACCACACCATTTGTGCAGGAATCTTACCCGATACCATGTTCAAGAAAAGAGGCAGTCGAAAAAGAGATTCAAAGAATGATTAGTTGGGGGGTTAGTAAAGGGTCCGATTCACCGTGCTCTAATCCCATAGTCCTTGTTAAAAAAGATGGTTCCAGTCGATTGTGTCTCGATGCTAGACGGTTGAATAAATCTATAATCCCAGATCGCGAATCTCCTCCGGTTATAAAAGAATTATTACGAAAATTCCATGgaATTGATAAAGATGTAAATGTATCCAGTTATATTTGCTCTGCATGTGTGACAAAGGTACAAGACGCATACACttttaaaaatactattttaaaagCGGATAAAGTGATAACCATTCCACTGAAAATATTAGAATCTACTGATAACCAAGCAGAAACTGTAAACACACTGCGACCATTTCTCCCAACCTAcacagaagaagaagaagaaagaatccTCCCATTCATAACAACATTGAACGATATAGAAACAAAAGAAGAAAGTGCAGTGTCACCTGTTGCTCCTATTCCCAACAATGTTCTAACTACGCCATTAAAAGAAGAATCAAATTCAGTATCTACATCTGTTCCAAAATCGGAAATAAATGATAAATCTATTTTGGGAAAACTTCTAACTGCACCACCCACAAACAGAAGCAGgtctcttaaaaataaaaaaaataaaaacattaatgaTACACAAACAACAACTCTTGTGACAAGTTCAAAGCTTAAGCCAAAAGTGAAAcgtacttataaaaaaagaagaaataatgaaataacttcGTCGCCTTTGATGTCCGAACACAGTTATAGTAAGCCTGTAGATGTGGAGACATCTGTTAAAAATACCAAATCAAAAGTTGAAGACGGTGAGAACTGTGAGGAGACTCCAATAACTAACAAAGATGTAAAACCTGAGATTAAAAAGTATTCAATTAGACCTTTATCGGATTCATTTGAAAAATGGTGGGTGAGAGGTCGTGGACCACCCTACCAGTGTAAATTGTGTGGACGTGATTATGGTGCAAGATATTCTGTATTTTATGCTCATGTTCGTACACATTTTATCAAGAAATTTCCTTGTACATATTGTGGTAAAAGATTTATTAGTGACAAATTAACAGTCCATATGAGGTCTCATACAAATGAGAGACCTTACCCATGTGAACAATGTCCGGCACGATTTACTTCAGTAACTAGTTTGAAAAGGCATAGATTGTCTCATACAGGTGAAAAGCCATTTATTTGTGATGTGTGTGGAAAAGAAGAAAGTGATATTCGTAATGGATTCTTCACTCTATCAATTATACATGAATTACGGAAATCCTATGATTTCcttgtaaatattgaaaatcacaGCGGTTACGGAATGATTACGTTGACATTTAAAGAGATTTCTATAGTAATTGATAAAGATGTAAATGTATCCAGTTATATTTGCTCTGCATGTGCGACAAAGGTACAAGACGCGTACActtttaaaagtactattttaaaaGCAGAAAAAGTGATAACTGCACCATTGAAAATATTAGAATCCATTGATAACCAAGCAGAAACTGAAAATACACTGCGACCATTTCTCCCAACCTacagagaagaagaagaagaagaagaagaagaagaagaaagaatccTCACATACATAACAACATTGAACGAAatagaaacaaaagaaaaaagtgCAGTGTCACCTGTTCCTCCTATTTCGAACAATGTTCTAACTACGCCATTAAAAGAAGAATCAAATTCAGTATCTGCATCTGTTCCAAAATTGGAAATAAATGTTAAATCTATTTTGGGAAAACTTCTAACTGCACCACTCACAAACAGAAGCAGGTCtcttaaaacgaaaaaaaataaaaacattaatgaTACACAAACAACAACTCTTGTGACAAGTTCAAAGTTAAAACCAAAAGTGAAACGTACTTATGAAAGAAGAAGGAATAAAAATGAACATGTACGGCCTAcactaaataatgaaataacttcGTCGCCTTTGATGTCTGAGCACAGTTATAGTAAGTTAGTAGATGGCACATTTGTGAAAAGTACTGAATCAGAAAATGAAAACGGTGAGAACTCTGTACCTCCAGATAATCTGGGTACCAAAGTGACCGAGGAGACACCAGTTACTGACAATAATGTAACGCCTGAGATTAAAAAGTATTCAATTAAACCTTTATCGAATTCCTTTGAAAAATGGTGGTTCAAAGGTTGTGGACCACCCTACCAGTGTAAATTGTGTGGACGTGATTATGGTGCAAGATATTCTGTATTTTATGCTCATGTTCGTACACATTTTATCAAGAAATTTCCTTGCACATATTGTGGTAAAAGATTTATTAATGACAAATTAAAAGTCCATATGAGGTCTCATACAAATGAGAGACCTTACGTATGTGAACAATGTCCGGCACGATTTATTTCAACAACAAGTTTGAAAAGGCATAGATTGTCTCATACAGGTGAAAAGCCATTTATTTGTGATGTGTGTGGAAAAGGATACAGCCAAAATTCTTCAATGCAAACGCATATGGAAACACACTATAAAACCACAGGCTGTGTCTGTGAAATCTGTGGAGTAACTCTTAGAAATTATGGCGCCTATGGAAATCACAAAACAAAGCATAAAATGGATACTAGCAGCAGTGAACATAATGAAAAATTCCCATGCAATCAATGTAACGCAGttttcaGCAAATCTCAGTCTCTCACTAGACATTATAAGATTCATAATTATGGAGCTTTTAAATGTACAATATGTGATGCAtcttttacagaaagttatagtTGTGAAGTCCATACATTCATGCATGAGGTACAATCATACGAGACTGATTTAATGTCGCTTCATTGTAAATTTTGCTTTGATATTTTTAACGACAAAAAGAACTTGGAAGAACATTTGTTAACGCACCTGAGCAATCCGCATAAATGCAAGAATTGCAATAAATCATTTCctactaaattaaaattgagaGCTCATTTACGAAAATATAGTGATACAAAACCTTTCAGTTGCATTGATTGTGGAAAGGCGGTTAGAACATTAACAGCATTATATCTACACAGAAAAATTCACACGGGTACAAAGAAACATATATGTGAAGTGTGCAGTCGAGCATTTCTTCAACCACATCAATTAATGTATCATATGCTCACTCACACAggagaaaaaaaatatgtatgtcaATATTGCGGGAAGGCATTTGCTTTGAATGGAAATTTAACTGTGCATGTTAGACGTCACACAGGTGAAACACCATACCGTTGCAAAATATGTGATAAAGGGTTCTACGACAGTAGTAGTCGTACAAAACATATTGCATCGAAACATAGAAATGAAAACGTAAAAAACCAAGCTTCAGATAATTAG
- Protein Sequence
- MKVNNTDTVQTSEEEEPVVNYVPQIVSRMEGIEQPLLLDTGSSVNVMSSSLFEEILGRNPKISILPAVGLSIQGVTGRISKVKKQALIPVEIGETIHQIIFLIVDNLHIPGILGMEWMSAKKAKINLQKEQFEFSLEEKEIVVPFMKRQEEANKSLELTLVRGTEMPMEVQNLKCPICPARLPIKSVFDNHMSRHDTKEVNIINFDTSLAKRIIEKNEEAFSDTPGGCRKYECKLNIGDTTPFVQESYPIPCSRKEAVEKEIQRMISWGVSKGSDSPCSNPIVLVKKDGSSRLCLDARRLNKSIIPDRESPPVIKELLRKFHGIDKDVNVSSYICSACVTKVQDAYTFKNTILKADKVITIPLKILESTDNQAETVNTLRPFLPTYTEEEEERILPFITTLNDIETKEESAVSPVAPIPNNVLTTPLKEESNSVSTSVPKSEINDKSILGKLLTAPPTNRSRSLKNKKNKNINDTQTTTLVTSSKLKPKVKRTYKKRRNNEITSSPLMSEHSYSKPVDVETSVKNTKSKVEDGENCEETPITNKDVKPEIKKYSIRPLSDSFEKWWVRGRGPPYQCKLCGRDYGARYSVFYAHVRTHFIKKFPCTYCGKRFISDKLTVHMRSHTNERPYPCEQCPARFTSVTSLKRHRLSHTGEKPFICDVCGKEESDIRNGFFTLSIIHELRKSYDFLVNIENHSGYGMITLTFKEISIVIDKDVNVSSYICSACATKVQDAYTFKSTILKAEKVITAPLKILESIDNQAETENTLRPFLPTYREEEEEEEEEEERILTYITTLNEIETKEKSAVSPVPPISNNVLTTPLKEESNSVSASVPKLEINVKSILGKLLTAPLTNRSRSLKTKKNKNINDTQTTTLVTSSKLKPKVKRTYERRRNKNEHVRPTLNNEITSSPLMSEHSYSKLVDGTFVKSTESENENGENSVPPDNLGTKVTEETPVTDNNVTPEIKKYSIKPLSNSFEKWWFKGCGPPYQCKLCGRDYGARYSVFYAHVRTHFIKKFPCTYCGKRFINDKLKVHMRSHTNERPYVCEQCPARFISTTSLKRHRLSHTGEKPFICDVCGKGYSQNSSMQTHMETHYKTTGCVCEICGVTLRNYGAYGNHKTKHKMDTSSSEHNEKFPCNQCNAVFSKSQSLTRHYKIHNYGAFKCTICDASFTESYSCEVHTFMHEVQSYETDLMSLHCKFCFDIFNDKKNLEEHLLTHLSNPHKCKNCNKSFPTKLKLRAHLRKYSDTKPFSCIDCGKAVRTLTALYLHRKIHTGTKKHICEVCSRAFLQPHQLMYHMLTHTGEKKYVCQYCGKAFALNGNLTVHVRRHTGETPYRCKICDKGFYDSSSRTKHIASKHRNENVKNQASDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -