Ppec019357.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070076.1:41699717-41702221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.3 53 5.9 7.0 1 23 194 216 194 217 0.96 2 22 0.0007 0.12 14.2 1.7 2 23 234 255 233 255 0.97 3 22 0.00068 0.12 14.3 2.8 2 23 263 284 262 284 0.97 4 22 0.002 0.35 12.8 2.1 2 23 292 314 291 314 0.97 5 22 0.0028 0.49 12.3 3.2 2 23 321 342 320 342 0.97 6 22 0.0003 0.053 15.4 1.1 2 23 350 371 349 371 0.97 7 22 0.00051 0.089 14.7 1.4 2 23 379 401 378 401 0.96 8 22 0.00073 0.13 14.2 4.5 2 23 408 429 407 429 0.97 9 22 0.0028 0.49 12.3 3.2 2 23 435 456 434 456 0.97 10 22 0.0003 0.053 15.4 1.1 2 23 464 485 463 485 0.97 11 22 0.0034 0.6 12.0 1.7 2 23 493 515 492 515 0.96 12 22 0.00073 0.13 14.2 4.5 2 23 522 543 521 543 0.97 13 22 0.00074 0.13 14.1 2.4 2 23 549 570 548 570 0.97 14 22 4.9e-05 0.0087 17.8 3.3 2 23 578 600 577 600 0.97 15 22 0.0002 0.036 15.9 4.5 2 23 607 628 606 628 0.97 16 22 0.00068 0.12 14.3 1.2 2 23 636 658 635 658 0.96 17 22 0.0002 0.036 15.9 3.4 2 23 665 686 664 686 0.97 18 22 0.00072 0.13 14.2 0.6 2 23 694 715 693 715 0.97 19 22 0.0016 0.27 13.1 1.4 2 23 723 744 722 744 0.97 20 22 0.0013 0.22 13.4 1.3 2 23 752 773 751 773 0.97 21 22 0.0015 0.25 13.2 1.7 2 23 781 802 781 802 0.98 22 22 0.0044 0.78 11.7 1.4 2 23 810 831 809 831 0.97
Sequence Information
- Coding Sequence
- ATGTCCACAGAAATTAATATAATTcagaacaaaataaaaggtgAACCACAGCTAGAAATTGAAGGGGTTGAACCACAGCAGGTAGAGAACATAAATCGCCTCCTTGTAACACacgtttataaattaaatgaaccAAAGCTCGAAATAATAGATATAAATTCAATTTGTGAAGAAACGCTGAACCAAGTTGAACCAAAACAGGAGGAAGAACTAAATTCCTTTCTTGTAACACAAatttgtgaaataaatgaccCACAGCTGGAAATAACAAACATAACTTCAATTTGCGAAGAAACGCCGAACCAAGTTCAACCAACACACGAAGAAGAACTAAATACCTTTCTAACACAAGATTATCAAGTAAATGTCAATCCCGCACAATCTTTTCATAATGACCAAACTGGTACAATTGTCAGAAGTGGATTAGAACTGCGTGTTATAATTTCTGAAGCCGACCAGGATGCAATTTTAAGttataaaatgacaattgtcAGAAGTGGATTAGAACTGAGTGTTATAATTTCTGAAGCCGACCAGGATGCAGTTTTAAGTTATAAAATCGCGgatgtttgtaaaaaatttaaatgtcaaaaGTGTAATTATGCGACAAAATTTGAAGCACATTTACATGAACATTCGGAGACACATCATGATGCAAATTGTCAAAGTCTGAAAGATAGTCAAGGTTTAGTTAAACTTAAATGTTATCAATGCACTTATACTACAAAATCTAGACCAAGTTTATTGAGGCATATGAAAATTCATTGTGCCGACTTAGAAGAGCTTAAGTGTCAACACTgtagttatgcgacaaaagtgAAACGGAATTTATTGAATCATATGAAAATTCATCGTTTTGACTTAGAAGAGGTGAAGTGCCCACACTgtagttatgcgacaaaagcaAAACGGAATTTATCGTATCATATGAAAATGTATCATACTGACTTAGAAGAGCTTAAGTGTCAACACTgtagttatgcgacaaaagtgAAACGGAATTTATCGTATCATATGAAAATTCATCGTACTGACTTAAAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACGGGAAAACAATTTATTGAATCATATGAAAATTCATCGTACTGACTTAAAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACGGGAAAACAATTTATTGAATCATATGAAAATGTATCATACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATGCGACAAAACagaaaaagtatttatttaatcataTGAAAATTCATTGTGCCGAAGAGCTTAAGTGTCAACACTgtagttatgcgacaaaagtgAAACGGAATTTATCGTATCATATGAAAATTCATCGTACTGACTTAAAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACGGGAAAACAATTTATTGAATCATATGAAAATTCATCGTACTGACTTAAAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACGGGAAAACAAGTTATTGAATCATATGAAAATGTATCATACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATGCGACAAAACagaaaaagtatttatttaatcataTGAAAATTCATTGTGCCGAAGAGCTTAAGTGTCAACACTgtagttatgcgacaaaagtgAAACGGAATTTATTGAATCATATGCAAATTCATCGTTTTGACTTAGAAGAGGTGAAGTGCCCACACTGTAGTTATGCGACAAAACGGAAAACGAATTTACGGTATCATATGAAAATGTATCATACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATGCTACAAAACGAAAAACGAATTTACGGTATCATATGAAAATTCATCGTACTGACTTAAAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACAGGAAAACAATTTATTGAATCATATGAAAATGTATCATACTGACTTAGAAGAGCTTAAGTGTCAACACTGTAGTTATGCGACAAAACGGAAAACGAATTTATGGTATCATATGAAAATTCATCGTACTGACTTAAAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACGGGAAAACAATTTATTGAATCATATGGAAATTCATCGTGCTGACTTAGAAGAGCTTAAGTGTCAACAGTGTAGTTACGCAACAAAACTGAAAAGGAATTTATTGAATCATATGAAAATTCATCGTACTGACTTAGAAGAGCTTAAGTGTCAACAGTGTAGTTATGCAACAAAACTGAAAAGGAATTTATCGAGACATATGTTAATTCATCGTGCTGACTTAGAAGAGCGTAAGTGTCAGCAGTGTAGTTATAGGACAAAATTGAAAGCGAATTTATTGAGTCATATGAGAATTCATCGAGCTGACATCAAAGAGATTAAATGTAAACATTGTAGTTATGTGACAAAATGGAGGGCTAATTTATGGAAACATGTCAGagtgcataataaaaaatag
- Protein Sequence
- MSTEINIIQNKIKGEPQLEIEGVEPQQVENINRLLVTHVYKLNEPKLEIIDINSICEETLNQVEPKQEEELNSFLVTQICEINDPQLEITNITSICEETPNQVQPTHEEELNTFLTQDYQVNVNPAQSFHNDQTGTIVRSGLELRVIISEADQDAILSYKMTIVRSGLELSVIISEADQDAVLSYKIADVCKKFKCQKCNYATKFEAHLHEHSETHHDANCQSLKDSQGLVKLKCYQCTYTTKSRPSLLRHMKIHCADLEELKCQHCSYATKVKRNLLNHMKIHRFDLEEVKCPHCSYATKAKRNLSYHMKMYHTDLEELKCQHCSYATKVKRNLSYHMKIHRTDLKELKCQQCSYATKRENNLLNHMKIHRTDLKELKCQQCSYATKRENNLLNHMKMYHTDLEELKCQHCSYATKQKKYLFNHMKIHCAEELKCQHCSYATKVKRNLSYHMKIHRTDLKELKCQQCSYATKRENNLLNHMKIHRTDLKELKCQQCSYATKRENKLLNHMKMYHTDLEELKCQHCSYATKQKKYLFNHMKIHCAEELKCQHCSYATKVKRNLLNHMQIHRFDLEEVKCPHCSYATKRKTNLRYHMKMYHTDLEELKCQHCSYATKRKTNLRYHMKIHRTDLKELKCQQCSYATKQENNLLNHMKMYHTDLEELKCQHCSYATKRKTNLWYHMKIHRTDLKELKCQQCSYATKRENNLLNHMEIHRADLEELKCQQCSYATKLKRNLLNHMKIHRTDLEELKCQQCSYATKLKRNLSRHMLIHRADLEERKCQQCSYRTKLKANLLSHMRIHRADIKEIKCKHCSYVTKWRANLWKHVRVHNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -