Ppec017544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrocoelia pectoralis
Gene Symbol
-
Assembly
GCA_036250285.1
Location
CM070076.1:14851114-14858029[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1e-05 0.0018 20.0 2.7 1 23 143 165 143 165 0.99
2 14 0.0015 0.26 13.2 6.1 2 23 172 193 172 193 0.97
3 14 0.00011 0.018 16.8 1.4 1 23 202 224 202 224 0.95
4 14 0.00029 0.051 15.4 3.5 2 23 289 311 288 311 0.96
5 14 0.00071 0.12 14.2 6.9 1 23 373 395 373 395 0.97
6 14 0.0012 0.21 13.5 2.2 2 23 402 424 402 424 0.95
7 14 7.5e-07 0.00013 23.6 0.6 1 23 429 451 429 451 0.98
8 14 1.7e-07 3e-05 25.6 2.3 1 23 461 483 461 483 0.98
9 14 6e-08 1.1e-05 27.0 1.5 1 23 490 512 490 512 0.97
10 14 2.1e-05 0.0037 19.0 1.6 3 23 524 544 522 544 0.92
11 14 0.00028 0.049 15.5 5.2 1 23 550 572 550 572 0.99
12 14 8.7e-06 0.0015 20.2 1.8 1 23 578 600 578 600 0.96
13 14 1.6e-07 2.8e-05 25.7 0.3 1 23 606 628 606 628 0.99
14 14 0.00042 0.074 14.9 0.1 1 23 634 658 634 658 0.92

Sequence Information

Coding Sequence
atgattAATAAAGATACTCAATTAATTATGCAAAGAATATGCAGATCATGCATGTGCGAAGGTACAGAAATGCGAAGTGTATTTGAAACCAAAGTAGCAGAAGAGGGCCAAATTCTGCTTGCCGATATGTTAATGTCTTGTACTTCTATAAAAATATCCACAGATGATGGACTACCAGTGCAGCTTTGTATCTCGTGCGAAACAAAACTTGACTGTGCAtttgaatttaaacaacaaTGCCAAAAGACAGATACAACATTACGGGAATTAACAAATCAGTATCTCCCAAAGAAATCTATAAAGGAAGAATCTTTGGATATTATTGTTCAACCTGATTTAGGAGACGCTTTCATTGATCAATCTGTTGATTCGGATAGCAATGAGGCACCTAACTCAAAACGTACAAATAAACTTGACTCCGGCACGTTTACATGTTCATACTGCCAAAAAGTTTTACGCACAAAGAAAGGATTAAAAATTCATCAAAGGCGACACACAGGTGAGAAAATGCGATCGTGTCATTTATGCCAAGCCAAATTCACAAGAACAAACCACTTGAGAAGACATCTAGAAACGCATAATAAATCTAATAAAACTTCATCTCATATTTGTGTAGAATGTGGTACTGCTTTTAATAAAGCCAGTCAattgtttaaacacaaaaaagaacATAAGTTGAGCGGTGATCAGATAAAGCCTTGTGCAGATTTTGAATCCAACGAAGATAGTACTCAGTGTAAAGATGGGGATTGGACGGACTGGCAAAATGCTGAGGATCAGATGGAAGATAgtgtagaaaataaaaatattgacagtatttcaataaacaaagataatgaaaagttaatggaaaaaaagGTAATGGTGTGTGAATTTTGTGATCGTAAATTTAAGTATAAGAAGAGTTTCATACATCACTTACAAACTGAACATGGTATGTCTGACGAAAGCGATGTTATCAACAATTTCTCTGTGGGCCAGGATGTTAAGTGTGAAGGCAATGAGACTCGTGAAATTGAAGATCCAAATGAATTAAAAGATATAACAAATCCAGAAGTTTCTGATGATGGTCTCAATGAAGAGGAGTTTTTGAAGCCAACTGAAAACAGAAAATACCACACATGTCATGTGTGCGAAGCAAAATTTTCACGTACCAATCATTTAACTAGACACATGACTTTACATAGAGCTGTACTTACCGAAAAATGTACTAGATGTGAGAAGGCTTTTGCCACTTGTGAATATTTATCGAAGCACCTTCAAGAAGATCACGTGGACAAACCTTATGTTTGTACAGTTTGTGATAAACCATTTTCCAGAGGAGAACATCTAATTcggcatttaaaaattcataatacTAATGAAGGGCAAGAGGAAAATCACAAATGTTCAATTTGCGATAAATCATTTAGCagaTCAGATCTTTTGGCAAGACATACCAAAGTACACTTAAAACAAGATAAAAGGCATGTTTGTACAGAGTGTGGAAAAGCTTTTAATCGAttagataacttaaaaactCATCAACGAATTCATACAGGAATCAAAGATAATTCCAGGTTGCATCTCTGTATTTATTGTGGGAAAGAATTTAATAATTCAAGCAATATGATTGTACACATGCGTAGACACACTGGAGAGCGACCTTACAAGTGCAGTATTTGCAATAAGGGATTTCCAAGATCACATGATTTAAAATGCCACGAACGTACTCATTCAGGCGAAAAACCATACTTATGCACATTATGCGGAAAatcttttaataaaagtaataaattgTTACGTCATACTAGAGTGCACACAGGAGAACGGCCTTATGTCTGCAATTTGTGTGGTAGAGCATTCACACAATCGAATGATTTAGCGCTTCATATGCGTAGGCACACTGGATCACGACCTTATGCTTGTGGTGTTTGTCCATCCCGATTTATACAATCCGGTCAGCTCAAAGCTCATCGTAGATCAACAGGACATTGGATGGAAACTCAGCCAGATTTGAAAGGTGGTCACAGAGTAGAACCCGTGACTCCACTTACAAATCCGACACCCATAAAGTTTAAAACACACGGGAAATATAACACAAAAGAAGGTGAGGAAATAGAACCAAAAgagccaaaaattttaaatcatacCGTTGGAATTATGggaaatattaatattcaaaataatactATTATTCAATCTCAACCAATTATCATTGATAGCACTAAATtaattcaacaatttcaaaatgGAGCCTTTGTCGGTTTCACTTCAGTTATTAATGCTTCGCCCCAAGTGGTTGCTGAAGGTGCGGAAGGTAAATTTAAATCGGAGGTACACGATTTCACTGTTACTGGTATTAATTGTGAAGAAACTCCCGCCACAGatcaaaaaattgatgtaacaGAAGAAAGCGGTGTCACTTTTTCCACTATCGCTTCGACATCTGCATTCGCAAATGTAGAGCAATATAGTTACCAAAGTTATGGATAG
Protein Sequence
MINKDTQLIMQRICRSCMCEGTEMRSVFETKVAEEGQILLADMLMSCTSIKISTDDGLPVQLCISCETKLDCAFEFKQQCQKTDTTLRELTNQYLPKKSIKEESLDIIVQPDLGDAFIDQSVDSDSNEAPNSKRTNKLDSGTFTCSYCQKVLRTKKGLKIHQRRHTGEKMRSCHLCQAKFTRTNHLRRHLETHNKSNKTSSHICVECGTAFNKASQLFKHKKEHKLSGDQIKPCADFESNEDSTQCKDGDWTDWQNAEDQMEDSVENKNIDSISINKDNEKLMEKKVMVCEFCDRKFKYKKSFIHHLQTEHGMSDESDVINNFSVGQDVKCEGNETREIEDPNELKDITNPEVSDDGLNEEEFLKPTENRKYHTCHVCEAKFSRTNHLTRHMTLHRAVLTEKCTRCEKAFATCEYLSKHLQEDHVDKPYVCTVCDKPFSRGEHLIRHLKIHNTNEGQEENHKCSICDKSFSRSDLLARHTKVHLKQDKRHVCTECGKAFNRLDNLKTHQRIHTGIKDNSRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSICNKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPSRFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPLTNPTPIKFKTHGKYNTKEGEEIEPKEPKILNHTVGIMGNINIQNNTIIQSQPIIIDSTKLIQQFQNGAFVGFTSVINASPQVVAEGAEGKFKSEVHDFTVTGINCEETPATDQKIDVTEESGVTFSTIASTSAFANVEQYSYQSYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-