Ppec036131.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070081.1:15697962-15702890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.028 4.8 9.2 3.7 1 23 82 104 82 104 0.95 2 13 0.2 36 6.5 2.8 1 19 110 128 110 130 0.95 3 13 8.1e-05 0.014 17.2 1.8 1 23 159 181 159 181 0.98 4 13 5.4e-06 0.00095 20.9 2.3 1 23 187 209 187 209 0.98 5 13 1.1e-05 0.002 19.9 3.2 1 23 215 237 215 237 0.98 6 13 4.8e-06 0.00084 21.0 1.6 3 23 248 268 246 268 0.96 7 13 1.9e-06 0.00033 22.3 0.6 2 23 275 296 274 296 0.96 8 13 2.7e-08 4.8e-06 28.1 2.1 1 23 302 324 302 324 0.98 9 13 1.4e-07 2.4e-05 25.9 3.3 1 23 330 352 330 352 0.99 10 13 1e-06 0.00018 23.1 1.7 1 23 358 380 358 380 0.99 11 13 1.4e-06 0.00024 22.7 2.7 1 23 386 408 386 408 0.98 12 13 1.7e-07 3e-05 25.6 0.4 3 23 416 436 415 436 0.98 13 13 5.8e-07 0.0001 23.9 1.6 1 23 442 464 442 465 0.96
Sequence Information
- Coding Sequence
- ATGGAATTAATGTGTAGGACGTGCttaaaagaagaaaaggaaCTAACACCAGTTTTTAATACAGAAGCTGCAAGTATGTTAGAAACATGCCACTTTATGAAGGTATCGGCTGAAGATAAGTTGCCTCAGAGCATTTGCTCCAAATGCTATGATATACTTGTTCAAAGCTACAACTTTAAAAAACAATGCGAGCAATCTGAAACGGCCTTAAAACAAATGCAAAACGAAATCACTTTAGAAATGCACCACTGTGACAAATGCCAGACATCATTTAATAcAATCGCCCAGCTTAAACCGCACCTAAATAATCATCAGGATAGTAAACATTTCCAATGTTGTAATTGCGATGCTATCTTTGTTAACACCTACGATTTGGATAACCATTCTTGTGATGTTGCAAGTGATAAAGACGATTCGCAAATGCCCGACGACTTAACAGCATTTTTAGATGAAGAATCTCCTCCTCCTTTAGCATTTCAATGTAACGAATGTTCACATTCGTTTAAGGTGCAAGACGATCTCGATTTACATTTAACTACACACTTACAGACGGCCGATTACAGTTGTAATCGATGTCAAAAACAGTTCGCAACTCGACAAATGTTAAAAAGGCATATTAAAATTCACATGTTACACAAGCCTCATGTTTGCAAGCTGTGTGGGAAAGGTTTCGCGGAATCACATGCGCTTACGAAACATACGCGTAAGCACCTAGGGCAACCTCGAGAAAAAAGGCACTTGTGCACAATTTGTGGACAAAGATTTTCCGAACCGTTTTATTTAAACGTCCATATGAGAAAACATACAGGTGAACGACCGCTCATGTGTGCCACCTGTGGTAAATCCTTTGCAGATCCACGTTCGTTAAAAGCACATCATATGACTCACACCGGTGAAAAACCACACAagtgtaatatttgccaaaaagCCTTCAGTCAAAGTGTTAATCTAACTAAACATATAAGAATTCATACCGGAGAGAAACCGTATGTCTGCTCCGAATGCGGAAAATGTTTTACACAGTCATCCAGTCTAGACAAACATTCGCGTACACACACAGGAGAAAAACCGTATAGCTGTGAACAGTGTCCAAAACGGTTTTCCGAAAAGGCTACATTGGTACACCATATTAGAACACATACCGGAGAGAAACCGTACGTCTGCGACCAATGCGGAAAGTGCTTTGCCAGTTCGTACGAATTAAAACTACATAATCGCAAACATTCAGGAATTAAGGTGAACATATGTAGCATATGCGGAAAGGATTTCGCAACGAAAAGTAATTTGTTAGTTCATACGCGTACGCACAGTGGGGAAAAACCTTTCGAATGCAATGTATGTAAACGTGCTTTTGCCGATAAAGGTtcgttaaaaaaacatttaaaagtgCACCATAATACGAATAAAGTTGAAACCGTTCCCGTAGTACAAACATTATCGGGTTCGTGCATTGAAATTGGATTAAACGATCGATTATATTTCAATCTTTCGTAA
- Protein Sequence
- MELMCRTCLKEEKELTPVFNTEAASMLETCHFMKVSAEDKLPQSICSKCYDILVQSYNFKKQCEQSETALKQMQNEITLEMHHCDKCQTSFNTIAQLKPHLNNHQDSKHFQCCNCDAIFVNTYDLDNHSCDVASDKDDSQMPDDLTAFLDEESPPPLAFQCNECSHSFKVQDDLDLHLTTHLQTADYSCNRCQKQFATRQMLKRHIKIHMLHKPHVCKLCGKGFAESHALTKHTRKHLGQPREKRHLCTICGQRFSEPFYLNVHMRKHTGERPLMCATCGKSFADPRSLKAHHMTHTGEKPHKCNICQKAFSQSVNLTKHIRIHTGEKPYVCSECGKCFTQSSSLDKHSRTHTGEKPYSCEQCPKRFSEKATLVHHIRTHTGEKPYVCDQCGKCFASSYELKLHNRKHSGIKVNICSICGKDFATKSNLLVHTRTHSGEKPFECNVCKRAFADKGSLKKHLKVHHNTNKVETVPVVQTLSGSCIEIGLNDRLYFNLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -