Basic Information

Insect: Pyrocoelia pectoralis
Gene Symbol: -
Assembly: GCA_036250285.1
Location: CM070074.1:83068492-83070464[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.8e-05 0.0084 17.9 0.8 1 23 146 168 146 168 0.96

2 16 0.11 19 7.3 1.7 1 23 173 195 173 195 0.97

3 16 0.00051 0.089 14.7 0.4 1 23 205 228 205 228 0.95

4 16 0.00018 0.031 16.1 0.1 2 23 247 268 246 268 0.96

5 16 0.56 99 5.1 8.5 1 23 274 296 274 296 0.82

6 16 1.1e-06 0.00018 23.1 1.4 1 23 304 326 304 326 0.98

7 16 1.2e-07 2.1e-05 26.1 2.2 1 23 331 353 331 353 0.97

8 16 0.00072 0.13 14.2 3.9 1 23 359 381 359 381 0.97

9 16 2.4e-07 4.3e-05 25.1 0.3 1 23 387 409 387 409 0.98

10 16 0.00021 0.037 15.9 1.7 1 23 415 437 415 437 0.97

11 16 2.9e-07 5.1e-05 24.8 1.8 3 23 445 465 443 465 0.96

12 16 2.4e-07 4.2e-05 25.1 0.1 2 23 471 492 470 492 0.97

13 16 3.1e-06 0.00055 21.6 1.0 1 23 498 520 498 520 0.97

14 16 5.5e-05 0.0096 17.7 0.1 1 23 526 548 526 548 0.98

15 16 2.8e-09 5e-07 31.2 0.6 1 23 554 576 554 576 0.99

16 16 0.86 1.5e+02 4.5 0.2 1 21 582 602 582 603 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.8e-05	0.0084	17.9	0.8	1	23	146	168	146	168	0.96
2	16	0.11	19	7.3	1.7	1	23	173	195	173	195	0.97
3	16	0.00051	0.089	14.7	0.4	1	23	205	228	205	228	0.95
4	16	0.00018	0.031	16.1	0.1	2	23	247	268	246	268	0.96
5	16	0.56	99	5.1	8.5	1	23	274	296	274	296	0.82
6	16	1.1e-06	0.00018	23.1	1.4	1	23	304	326	304	326	0.98
7	16	1.2e-07	2.1e-05	26.1	2.2	1	23	331	353	331	353	0.97
8	16	0.00072	0.13	14.2	3.9	1	23	359	381	359	381	0.97
9	16	2.4e-07	4.3e-05	25.1	0.3	1	23	387	409	387	409	0.98
10	16	0.00021	0.037	15.9	1.7	1	23	415	437	415	437	0.97
11	16	2.9e-07	5.1e-05	24.8	1.8	3	23	445	465	443	465	0.96
12	16	2.4e-07	4.2e-05	25.1	0.1	2	23	471	492	470	492	0.97
13	16	3.1e-06	0.00055	21.6	1.0	1	23	498	520	498	520	0.97
14	16	5.5e-05	0.0096	17.7	0.1	1	23	526	548	526	548	0.98
15	16	2.8e-09	5e-07	31.2	0.6	1	23	554	576	554	576	0.99
16	16	0.86	1.5e+02	4.5	0.2	1	21	582	602	582	603	0.91

Sequence Information

Coding Sequence: ATGAACCAATTTAGTAGCTTCGCaggtgtaaattttaataaactttgCCGTGTTTGTATGAATACTTTAGAGAATAGCTATATATCGTTATTTAATCCTAATTCTCCCAGTAACTCAATTTTATTAGCTTCAAAAATAATGTCCTTTGCAAATCTTCAGGTAATTTATGGTGATGGTCTCCCCCATTCCGTTTGTTTAAATTGCTCACAACAAATAGAAAACGCGTATCTTTTAAAACTGCAGTGCGAAGAATCCGATATAACATTACGTCGTTACTTAACTCCGCAAACCGTTACGAATTCTAATGTTACCGAAAATACGTTAGAAGCGGATTTTGATTCTTCGTTTCCAGAGACAACGGCAGATTTATTTCATACGTCTTGCATCACAGAAGATTCGAAAGCGCTCCCTCATTCGCCTAATGAGATAAGAAGTTACGAATGTATCGAATGTAAGAAGGTCTTTAATAAAGCCAGTGATCTCCGAATTCATAAGAAAACTCACAAAACTAAAGATTATCAATGTAAATTATGTTCAGACGGCTTTCATTCGTCTCAGCAACTTTCGGAACATGCGAAATTGCACGAgtcgaaaaaaaataaagatgcCGGTCATATATGTACAGTATGTGATGTAACGTATCAAGACAATAGCAAATTAATTGAGCACATGCTGAATGAGCATACGGAAAAAGTTGTTCACGAAGATGAGCGTGAAAAGACATCGGAAGAACGTTTAGTGTGCAATGTGTGTAATAAATCGTACTTAAAAGCTAGCAATTTAGCTGCGCATATGGGTACTCATACTGGTATTAAACCTTTCGAATGTAATGTTTGTGGAAAGTGTTTCACACAAGGTAGAGCGCATGCGTGTCATATGCGTACTCACTTGGACACAATTGAGAAGCCTCACCAATGCGAAGTGTGTAAAAAGGAATTTGTTCAAGAAAGTCAGTTAATTGTGCATATGAAGAAGCATTCCGGAAAATCGTTTATATGTACGGTGTGCGGGAAAAGCTATTGCAATTCGGGAAATTTAAAATCTCACATGCGTCTACATACCGGGGATAAACCTTACGCTTGCCATATTTGTGGGAAAAAATTTGCGCAAAGTAATGCGCATTCTTACCATATGAAAACACATACAGGGGAGAAGCCGTACACTTGCGACGTTTGTCCAAAAGCATTCACTACAAATGGTCAGTTGATAAATCATCGAAGACTACATACAGGAGAACGACCATTTGCGTGTGATGTTTGTAACAAACGGTTTACGCAAAAAGTAGCTCATACAATACATATGATGACACACACAGGCAATAAACCTCACCTTTGTAGTATATGCGGTAAAAAATACTCACAAAACAGTCAACTAATAGAGCACATGCGTTCACATACAGGGGAAACATTACAGTGCAGTACGTGTGGTAAAGGATATTCAACGGCCGGAAACTTAGCTGCTCATATGAAAACTCATACAGGTATTAAATCGCACATTTGCAATATATGCGATAAAGGATTTTATGTCGCCAACAAACTGGCGAAGCATATGAGAACACACACCGGTGAAAGACCATACGCTTGCTCCGTGTGTCCCAAAAGATTCACAAGTGCGGATGTGATGAAAATTCATGTACGTATACATACTGGTGAACGACCGTATCGTTGCGAGGTATGCGGAAAAGGGTTCACGAACAATTCTCAGTTAACGGTTCACATGCGATCTCATACTGGTCAAAGGCCCTATGTGTGCAGTATTTGTTGCCAAGGTTACACTACAGCTGCAGGATTATCCTTGCACTCGAACACGTGCACGAATGGTATCCGCCGAGTGTCTGATACTGCATCTTTCGCAAATATAAACTACAAATAa
Protein Sequence: MNQFSSFAGVNFNKLCRVCMNTLENSYISLFNPNSPSNSILLASKIMSFANLQVIYGDGLPHSVCLNCSQQIENAYLLKLQCEESDITLRRYLTPQTVTNSNVTENTLEADFDSSFPETTADLFHTSCITEDSKALPHSPNEIRSYECIECKKVFNKASDLRIHKKTHKTKDYQCKLCSDGFHSSQQLSEHAKLHESKKNKDAGHICTVCDVTYQDNSKLIEHMLNEHTEKVVHEDEREKTSEERLVCNVCNKSYLKASNLAAHMGTHTGIKPFECNVCGKCFTQGRAHACHMRTHLDTIEKPHQCEVCKKEFVQESQLIVHMKKHSGKSFICTVCGKSYCNSGNLKSHMRLHTGDKPYACHICGKKFAQSNAHSYHMKTHTGEKPYTCDVCPKAFTTNGQLINHRRLHTGERPFACDVCNKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLIEHMRSHTGETLQCSTCGKGYSTAGNLAAHMKTHTGIKSHICNICDKGFYVANKLAKHMRTHTGERPYACSVCPKRFTSADVMKIHVRIHTGERPYRCEVCGKGFTNNSQLTVHMRSHTGQRPYVCSICCQGYTTAAGLSLHSNTCTNGIRRVSDTASFANINYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -