Ppec040733.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrocoelia pectoralis
Gene Symbol
-
Assembly
GCA_036250285.1
Location
CM070083.1:7518403-7520857[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.32 55 5.9 0.4 1 23 251 273 251 273 0.95
2 18 2.7e-06 0.00047 21.8 1.9 2 23 280 301 279 301 0.97
3 18 7.2e-05 0.013 17.3 0.2 1 23 307 329 307 329 0.99
4 18 0.00016 0.027 16.3 0.1 1 23 335 357 335 357 0.97
5 18 1.5e-06 0.00026 22.6 1.9 1 23 363 385 363 385 0.99
6 18 1.8e-05 0.0032 19.2 0.2 1 23 391 413 391 413 0.99
7 18 5.5e-06 0.00096 20.8 2.2 1 23 419 441 419 441 0.99
8 18 5.3e-06 0.00093 20.9 1.9 1 23 447 469 447 469 0.98
9 18 3.3e-06 0.00057 21.6 0.8 1 23 475 497 475 497 0.99
10 18 6.1e-06 0.0011 20.7 0.5 1 23 503 525 503 525 0.98
11 18 1.1e-05 0.002 19.9 3.0 1 23 531 553 531 553 0.99
12 18 7.7e-06 0.0013 20.4 0.4 1 23 559 581 559 581 0.99
13 18 2.8e-05 0.005 18.6 5.0 1 23 587 609 587 609 0.98
14 18 9.2e-05 0.016 17.0 0.1 1 23 615 637 615 637 0.99
15 18 6.4e-07 0.00011 23.8 3.6 1 23 643 665 643 665 0.99
16 18 2.9e-06 0.00051 21.7 0.4 1 23 671 693 671 693 0.99
17 18 7.6e-05 0.013 17.2 6.4 1 23 699 721 699 721 0.99
18 18 0.00095 0.17 13.8 4.2 1 23 727 749 727 749 0.98

Sequence Information

Coding Sequence
ATGATGGAGACGAATTCCttcgaaaatattttcgaaGTGTGTCGAACGTGTCTTCAACAGATAAATCGCGGTGCACAAATATATTATTTGGATACAGTTCTGTCGAATCTCGAATCGACAACAATAAGAAACAAGCTAACAGATTGTCTTCCGGAGCTTGATCTTAATGTTACACCGAATGCGGCAGTTTGTGTCGATTGCACCGAGGCTATTAACCTCAGCCATAAGTTTAAGAAACAGTGCTTGCAAACGGAGAAAGATATACAATGTTACGTAAAGAGGATGGGTAATACGACGAAATGTGTCGATCTCGTCCATTTACTGCAACAACAGACCAAAATACAAGAGTACGTTCCGCCGATTCGAATTAAACAGGAGGTCGTCGACGATGAAATTGTATCGAATGTGGATCCGGATCCCTCTGAACAATCTGAGCCACCCTTCATCGCTAATATTAAGGAAGAGAAAGTCGACGCGAGTTACGAAGTTGAGATCGAGCCTCCTCGTATTGATTTGGAACCTCCTCGTATCGATTTGGAGCCTTCTCGTATCGATTTGGAGCATGAGAGTCCCGAACACAATATTTTAATCGATAAAGTCGAAACAATTCTTAACGAGGGGGACGATAAGAATCCTTCCGATGTCGTCGGAGAATCTCATCCGAATGTTTCGCAACCGTGCGTCACTGTTACCGATCCGGACCCTTTTAATCCGCAACGGTACATTCGGAGACTTTTCGGAAGACCGCTGTACGACTGTGGCGTTTGCGGTTACAAGACGGCTTTGAAACGTAGATTAGTTTTGCACAAGAAACTGCACGACGAgaacaaacttttgaaatgtaaggAATGTGATTATGTGTGCGCGCAGAGAAGTAATTTTAACGTACACATGCGCATACACACCGGTTTTAAGCCGTACAAATGCGGACAATGCGAGTACTCGACAGTTTCAAATTCGGCGCTAATCGTTCATAGACGCATTCACACGGGCGAGAAACCGTACGCTTGTAACGTATGCGGTTACATGTCCATCTCCAAATCCGCATTAACCGTACACAACCGGATACATTCGGGAAGTAAACCGTACCGTTGCACCATCTGTACGTACCGTACCGTTACGAAATCGTCGTTAACGGTACATATGCGAACGCACACCGGCGATCGCCCGTACAAGTGCAATTTGTGCCCGTACACGACGACGGCAAAATCGGCATTAAACGTCCACATACGCATACACGAAGGCTACAAACCTTTCCAGTGTTCCGAGTGTGAGTATCGTTGCACGCAGCGAAGCGGATTGAATGTTCATATGCGAATACACACGGGCGATAAGCCGTACCACTGCGAAGAATGCGACTACAGGAGCAGTAATCGAAGCAGTTTAGTTGTACACATGCGAACGCATTCGGGCGAGACTCCTTACAAGTGTACCGAATGCGAGTACAGTACCGCATCGAAATCGTCCCTCAACGTACACGTACGAACACACGGCGATAACAAACCGTTTATATGCGTCGAATGCGGCTATAAATGTGCGCAAAGGAGTGCGCTAACCGTACACATGCGTATACATACGGGCGACCGCCCGTATCAGTGCACCTTATGCGAGTACCGTTGCAGTTATCGAGGCAATCTTAAGGTACACATGCGCGTACACACTGGCGAAACGCCCTACCAATGTTTCGTCTGCGGTTACAGCACGACATCAAAGTCAGCTTTGGTCGTACACACGCGTATTCACACGGGCGAGAAACCGTACCACTGTACCGAATGCCCGTACAAGTGTAGCACGAAAAGTAGTCTGAAGGTACATTTACGCGTACATACGGGCGAAACACCCTACGAATGCAGCGTTTGCAACTACAAAACGTCTGCGAATTCTGCACTCGTCGTCCACATGAGGATTCATACGGGCGAAAAACCGTACAAGTGTACCGAATGTCCGTACAGATGTAGTAACAAATCCAGTTTGAAGGTACACATACGAACGCATACGGGTGAAACACCGTTTAAATGCACTTACTGCGATTACAGTTCCAGTTCTAACTCGGCGCTGGCGGTACACTTGCGAATACACACCGGTGTAAAACCGTATCAGTGCCACGATTGCACGTACAGATGTAACAACAAGAACAGCCTAAAAGTGCACATGAAGGTACATCAAGGTCGAAGGCCCTATAAATGTCAGATCTGTTCGTACGCCTACAAAAAACGTTTCGTATTAAAACGTCACATGCACGTTCACGCCAAGGAGCAGTTACAGAAAGAGCTGGCGAATAGTCGAAATGACGTAGAAGTTAGCGATTCAACTCCCATTATAAAAGAATACGTAAGCGACGAGGAACCTGTCATcgaggaggaggaggaagagGTGGAAGATACGAAACCTCTAATTTCGctttaa
Protein Sequence
MMETNSFENIFEVCRTCLQQINRGAQIYYLDTVLSNLESTTIRNKLTDCLPELDLNVTPNAAVCVDCTEAINLSHKFKKQCLQTEKDIQCYVKRMGNTTKCVDLVHLLQQQTKIQEYVPPIRIKQEVVDDEIVSNVDPDPSEQSEPPFIANIKEEKVDASYEVEIEPPRIDLEPPRIDLEPSRIDLEHESPEHNILIDKVETILNEGDDKNPSDVVGESHPNVSQPCVTVTDPDPFNPQRYIRRLFGRPLYDCGVCGYKTALKRRLVLHKKLHDENKLLKCKECDYVCAQRSNFNVHMRIHTGFKPYKCGQCEYSTVSNSALIVHRRIHTGEKPYACNVCGYMSISKSALTVHNRIHSGSKPYRCTICTYRTVTKSSLTVHMRTHTGDRPYKCNLCPYTTTAKSALNVHIRIHEGYKPFQCSECEYRCTQRSGLNVHMRIHTGDKPYHCEECDYRSSNRSSLVVHMRTHSGETPYKCTECEYSTASKSSLNVHVRTHGDNKPFICVECGYKCAQRSALTVHMRIHTGDRPYQCTLCEYRCSYRGNLKVHMRVHTGETPYQCFVCGYSTTSKSALVVHTRIHTGEKPYHCTECPYKCSTKSSLKVHLRVHTGETPYECSVCNYKTSANSALVVHMRIHTGEKPYKCTECPYRCSNKSSLKVHIRTHTGETPFKCTYCDYSSSSNSALAVHLRIHTGVKPYQCHDCTYRCNNKNSLKVHMKVHQGRRPYKCQICSYAYKKRFVLKRHMHVHAKEQLQKELANSRNDVEVSDSTPIIKEYVSDEEPVIEEEEEEVEDTKPLISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-