Ppec037442.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070081.1:30773498-30778075[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00045 0.079 14.8 1.9 2 23 24 46 24 46 0.92 2 20 0.034 5.9 8.9 0.1 3 23 54 74 53 74 0.95 3 20 2.3e-05 0.004 18.9 2.1 1 23 80 103 80 104 0.95 4 20 0.0022 0.39 12.6 0.8 1 23 109 132 109 132 0.92 5 20 3.1e-06 0.00054 21.6 3.2 1 23 137 159 137 159 0.99 6 20 0.0001 0.018 16.8 2.6 2 23 169 190 168 190 0.97 7 20 4.5e-05 0.0078 18.0 0.4 1 23 196 218 196 218 0.98 8 20 3e-06 0.00053 21.7 1.5 1 23 224 246 224 246 0.98 9 20 0.00018 0.032 16.1 2.5 1 23 252 274 252 274 0.98 10 20 1.9e-08 3.3e-06 28.6 1.0 1 23 280 302 280 302 0.99 11 20 0.002 0.36 12.7 0.8 5 23 336 355 332 355 0.91 12 20 0.0049 0.85 11.6 1.0 1 23 361 383 361 383 0.93 13 20 4.4e-05 0.0077 18.0 0.4 2 23 390 412 389 412 0.95 14 20 3.9e-05 0.0068 18.2 3.1 1 23 418 441 418 441 0.97 15 20 1.2e-05 0.0022 19.7 2.8 1 23 446 468 446 468 0.99 16 20 0.0015 0.26 13.2 1.1 2 23 478 499 477 499 0.97 17 20 5.9e-05 0.01 17.6 2.5 1 23 505 527 505 527 0.98 18 20 1.4e-07 2.5e-05 25.8 2.8 1 23 533 555 533 555 0.99 19 20 3.5e-06 0.00061 21.5 3.7 1 23 561 583 561 583 0.98 20 20 2.8e-06 0.0005 21.7 0.2 3 23 591 611 589 611 0.97
Sequence Information
- Coding Sequence
- ATGTATCGACTGGTCAATGTAGCAGTGATTAATGAGAAACAAGCGGAAGAAACTGCTGGCGAGTTGGAAAGTTGCTCTAAGTGTAACATGACTTTTACGACTAGAGAAAAATTATGGAGACATAATAGCTCCGAGCATAGAAAGACACCCAAGCCTGCGTGTGCTACATGCGGGAAGTTATTTAAGTATCCCGCCTTGGCCAAAAATCACGAATTAGTTCACAAGGTCGGTAAAATGTTCCAGTGTGATCTTTGTGACAAATCATTCAAGAATAGTAAATCCCTAGGAAGTCACGTAATGTACGAACACCACAAAAGTAGTAAATACAAATGCCAGGAATGTGgtcaaatattttataataaaacgaTATTAAAGGCGCACAACACACGAGTGCATCTGAACGTGACCTACAGCTGCTCCGACTGCAACAAGGTGTACAAAAATAAAGAGTACTTTAATCTTCATCGTCGCACTCACCTACCAGATTACGTACCATTATCACTAACATGTACCGTATGCGACAATAAATTTTCATCGAGGCAATCGTTACATGTGCACATCAAGACTCACAGGGTCGATCAGAAGTATGTCTGCGATAGCTGCGGAAAAAGTATCAAAAGTCTTGGTAGTTTTAAGAATCATTTAAGGATACATTCAGGCGAGAAGCCGTTTAAATGCAAGGAGTGTGGCAAGGAATTTTCGGCCAAGAGACATTTGGTCGTCCACGAGCGCGTACATACGAAAGAGAAACCTTACTGCTGTAATCTGTGTCAGAAACTGTTTACGCAGCGAGGCACGCTTGCGATACACCTGCGTCAGCATACGGGAGAGCGACCGTATTCGTGCAACATTTGCGCAAAATCATTTGTATCTAAAACGAACTTAAAGGCGCACATGAGGACGCACAAATACCGAGTTTGGCAACTGTACCGAGTTTTAAAGCTTCCGATCACCGATTTGCCCACTTCCAGTGATCCCCCCGAATCTTCGAGCTTGAACTGTATCAACTGTGGCAAAACATTCAAGAACAAACAGAAATTAGGGGCACATAACAGGTCTGTGCACAAGACACATAAAACCCACCCATGCAAAATATGTGGAAAACTCTTCAAATACAAGGGTTTGGCACTCAATCACGAAGATAAGCATAATCCACACTACGAAATAAGGTGTGATGTTTGCGGCAAGTTATTCGCTGACAAATACTACCTCAAggttcacaaattgaaactgcACGTCAAGGAGCACAAGTTCCAGTGCCCGAAATGCGACAAGGCTTTCTATTACAAGTGCGAATTGGAGGCTCACAATAAAAGATCGCACTTATTTGTGACGTACACCTGTACGGATTGTAACAAAACGTACATAgacaaaaattatttcagtgCGCATCGCAAAACTCATGCCGCCCATTACGTGCCAAAAGTTGTGACGTGCACCTTATGCGAAGCCAGGTTTTCGTCAAGACGTGCCTACAAAATCCATCGAAAGTCGCACGAGCTTGACCAGCAGTATGTCTGCGATACTTGCGGTAAATGCATCACAAGTTTGAGGAGCTTTAAGAACCATCTGAGGATACATGCGGGTACTAAACCTTTTCAGTGCCACAATTGTGGCAAGGCGTTTACGACAAAAAACCTTTTGCGAACCCACGTCAGGGTACATACGAAGGAAAAACCGTATTCCTGTCATATTTGTAAAAAGCAATTCACGCAGCGAGGTACCCTTACGATTCATTTACGACAGCACACCGGTGAGCGTCCGTACGGTTGTGACATCTGTGGGAAGTCGTTTGCGGCCAAAACGTCATTAAGATCTCACATGAATGTACATGCTAATTGTCGAGTGAAGAAAAAATCGAAATAA
- Protein Sequence
- MYRLVNVAVINEKQAEETAGELESCSKCNMTFTTREKLWRHNSSEHRKTPKPACATCGKLFKYPALAKNHELVHKVGKMFQCDLCDKSFKNSKSLGSHVMYEHHKSSKYKCQECGQIFYNKTILKAHNTRVHLNVTYSCSDCNKVYKNKEYFNLHRRTHLPDYVPLSLTCTVCDNKFSSRQSLHVHIKTHRVDQKYVCDSCGKSIKSLGSFKNHLRIHSGEKPFKCKECGKEFSAKRHLVVHERVHTKEKPYCCNLCQKLFTQRGTLAIHLRQHTGERPYSCNICAKSFVSKTNLKAHMRTHKYRVWQLYRVLKLPITDLPTSSDPPESSSLNCINCGKTFKNKQKLGAHNRSVHKTHKTHPCKICGKLFKYKGLALNHEDKHNPHYEIRCDVCGKLFADKYYLKVHKLKLHVKEHKFQCPKCDKAFYYKCELEAHNKRSHLFVTYTCTDCNKTYIDKNYFSAHRKTHAAHYVPKVVTCTLCEARFSSRRAYKIHRKSHELDQQYVCDTCGKCITSLRSFKNHLRIHAGTKPFQCHNCGKAFTTKNLLRTHVRVHTKEKPYSCHICKKQFTQRGTLTIHLRQHTGERPYGCDICGKSFAAKTSLRSHMNVHANCRVKKKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -