Ppec037443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrocoelia pectoralis
Gene Symbol
-
Assembly
GCA_036250285.1
Location
CM070081.1:30780215-30792359[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 5.9e-05 0.01 17.6 2.1 2 23 55 77 54 77 0.92
2 31 0.0051 0.89 11.5 0.1 1 23 83 105 83 105 0.95
3 31 1.4e-05 0.0025 19.5 1.9 1 23 111 134 111 134 0.96
4 31 3.2e-05 0.0056 18.4 2.0 1 23 139 162 139 162 0.98
5 31 8.3e-06 0.0015 20.3 1.1 1 23 167 189 167 189 0.99
6 31 0.001 0.18 13.7 1.5 1 23 198 220 198 220 0.98
7 31 0.00089 0.16 13.9 0.3 1 23 229 251 229 251 0.98
8 31 7.9e-07 0.00014 23.5 0.3 1 23 257 279 257 279 0.99
9 31 1.7e-05 0.0031 19.3 4.0 1 23 285 307 285 307 0.98
10 31 5.9e-05 0.01 17.6 2.1 2 23 355 377 354 377 0.92
11 31 0.0051 0.89 11.5 0.1 1 23 383 405 383 405 0.95
12 31 8.6e-06 0.0015 20.2 0.7 1 23 411 434 411 434 0.95
13 31 5.8e-06 0.001 20.8 1.7 1 23 439 462 439 462 0.98
14 31 8.3e-06 0.0015 20.3 1.1 1 23 467 489 467 489 0.99
15 31 0.0043 0.75 11.7 1.4 1 23 498 520 498 520 0.98
16 31 0.00089 0.16 13.9 0.3 1 23 529 551 529 551 0.98
17 31 1.6e-05 0.0027 19.4 0.1 1 23 557 579 557 579 0.99
18 31 0.00093 0.16 13.8 3.2 1 23 585 607 585 607 0.94
19 31 0.0008 0.14 14.0 2.4 1 23 692 715 692 715 0.96
20 31 0.0033 0.58 12.1 0.4 1 23 721 744 721 744 0.94
21 31 0.052 9.1 8.3 0.7 1 13 748 760 748 763 0.90
22 31 3e-05 0.0052 18.5 3.5 1 23 782 805 782 805 0.95
23 31 0.0018 0.32 12.9 2.2 1 23 811 833 811 833 0.93
24 31 1.2e-05 0.002 19.8 2.7 1 23 839 862 839 862 0.97
25 31 0.0019 0.33 12.9 1.5 1 23 868 891 868 891 0.95
26 31 4.3e-07 7.5e-05 24.3 1.9 1 23 896 918 896 918 0.99
27 31 0.0038 0.67 11.9 3.9 1 23 927 949 927 949 0.99
28 31 0.00061 0.11 14.4 0.2 2 23 957 978 956 978 0.97
29 31 1.1e-05 0.002 19.8 0.9 1 23 984 1006 984 1006 0.99
30 31 1.6e-06 0.00027 22.6 3.8 1 23 1012 1034 1012 1034 0.99
31 31 0.0011 0.19 13.6 4.1 1 23 1040 1062 1040 1062 0.98

Sequence Information

Coding Sequence
ATGTGTGTCTTCATTGTATTAACTGTGACTTTCCTTTCTAGATATACGGTTTGGCAATTGTACAGGGTTGTCAAAGTGCCTGGCCCATCCGATTATGTAAAATTATCACCACCACAAAGTCCCGCTCCTGAAACAATTGTAACAACACCGACCGCGAGCCTAAGTTGCCCGAAGTGCGACAAAACATTCAATGACAAACAAAAACTCTTCAAACATAAAAGTTACGTTCACAACTCGAAGCTAAGATATCCATGCGAAGTGTGCGGAAAACTGTTTAGGTCGTTCAGTGCCGCGACGTATCACGTCGACGTTCACAATCCGGAAAAGACTTACGCCTGCGATATTTGTGGTAAGTTCTATTCGGACAAGCATTATCTGAAGGTACACAAAATGAAGATACACACCAGCGGACGCTTTAAATGCGAAAAGTGCGACAAAACGTTTTACTACAAACCGGAGTTGGACAGCCACACCAGAAAGGTACACTTGGGCGTTACTTACACCTGCCCGGACTGTAACAAGGTGTACGTCGACGAAAAATACTACAAAATTCACCGAAAAACTCATCAGCCCGGTTACGTGCCGAGAACTTTCACTTGCGTCATTTGTAAAGCGAAATTCACCGGCAAACAGGGATACAACAAACACATTAAAAAGCACGGCGTTCAGACGCCGAAACAACCGTTCGTCTGCGATACGTGCGGAATACGTATCGTAAGTCTCAGCAGTTTCAAAAATCATCTCAGACTGCATTCTGGCGAAAAGCCTTTCAAGTGTAACGATTGCGGAAAGGAATTTGCGACTAAGGCTGTTTTAAGAACGCACGTGAGGGTGCATACGAAGGAAAAACCGTTTTCTTGCACCGTATGTTTGAAACACTTTACGCAACGCTCCACTCTTACAATTCATATGCGTCAGCACACTGGCGAACGTCCCTATAAATATACGGTTTGGCAATTGTACAGGGTTGTCAAAGTGCCTGGCTCAGCCGATCATGTAAAATTATCACCACCACCGACTCCCGCTCCTGAAACGAGTGTCACAACACCGACCGCGAACCTAAGTTGCCCGAAGTGCGACAAAACATTCAATGACAAACAAAAACTCTTCAAACATAAAAGTTACGTTCACAACTCGAAATTAAGATATCCATGCGAAGTGTGCGGAAAACTGTTTAGGTCGTTCAGTGCCGCGACGTATCACGTCGACGTTCACAATCCGGAAAAGACTTACGCTTGCGATATTTGTGGTAAGTCCTATTCGGACAAGCAATATCTGAAGGTACACAAAACGAAGGTACACACCAGCGGACGCTTTAAATGCGAAAAGTGCGATAAATCGTTTTACTACAAATCGGAGTTGGACAGCCACGCCAGAAGGGTACACTTGGGCGTGATTTACACCTGCCCGGACTGTAATAAGGTGTACGTCGACGAAAAATACTACAAAATTCATCGAAAAACTCATCAGCCCGATTACGTTCCGAGAACTTTCACTTGCGTCATTTGTAAAGCGAAATACACCGGCAAACAGGGATACAACAAACACATTAAAAAGCACGGCGTCCAGACGCCGAAACAACCGTTCGTCTGCGATACGTGCGGAATACGTATCGTAAGTCTCAGCAGTTTCAAAAATCATCTCAGACTGCATTCGGGTGAAAAGCCGTTCAAGTGCAACGATTGCGGAAAGGAATTTGCCGCGAAGGCTGTTTTAAGGACGCACGTGAGGGTGCATACGAAGGAAAAACCGTTTTCTTGCATCGTATGTTTGAAACACTTTACGCAACGCTCCACGCTTACAATTCATATGCGTCAGCACACTGGCGAACGTCCCTATAAaTATGTGATTTGGCAACTTTATCGCGTAGTAGACCCATCGATTGCCTCTAATTCACCGGAAGAAGTCCCGTCGGCAGTGGATCATTCCAATTCGATTAACGTCAAGTCAGAGTTTCAACCGGAAATTTGTAACGACGAAAAAATCGAAACGAAAACCGATTTACGAGTCAAATCGCGCAAAAACGCTCATCGAGTAATGGCCCCAGAAGGGGGCCGCTCACAAAAACGTCGATTTTATTGCGATTTGTGCAATAGGTCATACTCTTTGAAGTACAATTTGAGTGCTCACAAAAGTCGAAAACATTCGACGGTGCCTAAATTTTTGTGCGATAAGTGCGGTAATGGATTTTCTTATAAATTGGAGTTGGAGGCTCACCGTATTAAAACGCACTCCAAAACTTTTCAGTGTCCGGATTGCGAAAAGGTGTACACGGATGAGAAGTACACAATATGGCAACTCTATCGTGTAGTCAAATTGTCCAAGCCTCAGGCACCACAGATATTCAGCTGCACCACTTGTCAGAAAAGTTTCAAGAACAAAAAGACGTTGAGAACGCACGTCAACTACGTTCACAACAGAGTAGCATGTCATCCCTGTAAAATATGCGGAAGACCGTTTAAGCACAAGACGGATGCAAAATATCACGAAGATGTCCACAATTCGACCAAGGGGCACAAATGCGAGATTTGCGGTAAATCTTACTTCTCCAAGTACTACTTGAAGATACACATATCAAGGGATCACGCCGATaatagaaaatttgaatgcaaaAAGTGTGACAAGAGGTATTATTACGAGCGAGAGTTGGAACTGCACAATAATAAGGCACACTTAGGTGTCAACTTTAAGTGTCCCGATTGTGACAAGACGTACATCGATTTACACTACTTAAACGCCCATCGCCGTACTCATGAACCCGATTACATACCAAAAGTCTACACCTGCGGCCATTGCCGCACTAAGTATACCTCAATGGCAGGTTACACGAAGCATCTCAAAACGCACAGCTCCAAAGACCAATGTCTTGTATGTGACACTTGTGGTAAACGGATCAGTAGCATGGCGAGCTTCCAAAATCATCTAAGGATACATTCGGGCGAAAAACCGTTCAAGTGTACGACATGCGATAAGGCTTTCTCGTCCAAAAGTATTCTGGTGACCCATCTGAGAGTACACACCAAGGAGAAGCCTTACAAGTGCGAGCATTGTTCGAAGAGCTTCACTCAGCGTGGCACCCTCACCATTCATTTACGTCAACACACCGGAGAGCGACCGTATACGTGCCATATTTGTAGCAAATGTTTCGCCTCGAAAATGATTTTAAGATCACACATCAAAGCGCACCTTAAATCTGTAGATAAGGGCGCACCGTTTTAA
Protein Sequence
MCVFIVLTVTFLSRYTVWQLYRVVKVPGPSDYVKLSPPQSPAPETIVTTPTASLSCPKCDKTFNDKQKLFKHKSYVHNSKLRYPCEVCGKLFRSFSAATYHVDVHNPEKTYACDICGKFYSDKHYLKVHKMKIHTSGRFKCEKCDKTFYYKPELDSHTRKVHLGVTYTCPDCNKVYVDEKYYKIHRKTHQPGYVPRTFTCVICKAKFTGKQGYNKHIKKHGVQTPKQPFVCDTCGIRIVSLSSFKNHLRLHSGEKPFKCNDCGKEFATKAVLRTHVRVHTKEKPFSCTVCLKHFTQRSTLTIHMRQHTGERPYKYTVWQLYRVVKVPGSADHVKLSPPPTPAPETSVTTPTANLSCPKCDKTFNDKQKLFKHKSYVHNSKLRYPCEVCGKLFRSFSAATYHVDVHNPEKTYACDICGKSYSDKQYLKVHKTKVHTSGRFKCEKCDKSFYYKSELDSHARRVHLGVIYTCPDCNKVYVDEKYYKIHRKTHQPDYVPRTFTCVICKAKYTGKQGYNKHIKKHGVQTPKQPFVCDTCGIRIVSLSSFKNHLRLHSGEKPFKCNDCGKEFAAKAVLRTHVRVHTKEKPFSCIVCLKHFTQRSTLTIHMRQHTGERPYKYVIWQLYRVVDPSIASNSPEEVPSAVDHSNSINVKSEFQPEICNDEKIETKTDLRVKSRKNAHRVMAPEGGRSQKRRFYCDLCNRSYSLKYNLSAHKSRKHSTVPKFLCDKCGNGFSYKLELEAHRIKTHSKTFQCPDCEKVYTDEKYTIWQLYRVVKLSKPQAPQIFSCTTCQKSFKNKKTLRTHVNYVHNRVACHPCKICGRPFKHKTDAKYHEDVHNSTKGHKCEICGKSYFSKYYLKIHISRDHADNRKFECKKCDKRYYYERELELHNNKAHLGVNFKCPDCDKTYIDLHYLNAHRRTHEPDYIPKVYTCGHCRTKYTSMAGYTKHLKTHSSKDQCLVCDTCGKRISSMASFQNHLRIHSGEKPFKCTTCDKAFSSKSILVTHLRVHTKEKPYKCEHCSKSFTQRGTLTIHLRQHTGERPYTCHICSKCFASKMILRSHIKAHLKSVDKGAPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-