Pser012254.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995155.1:10743949-10745418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 20 6.2 3.3 1 23 48 71 48 71 0.94 2 12 3.8 2.7e+02 2.7 2.0 2 20 103 121 102 123 0.88 3 12 0.00085 0.059 14.2 1.6 1 23 158 181 158 181 0.97 4 12 0.0057 0.4 11.6 2.9 1 23 190 213 190 213 0.97 5 12 0.19 13 6.8 0.3 2 23 221 243 220 243 0.93 6 12 0.034 2.4 9.1 5.8 1 23 252 275 252 275 0.95 7 12 0.0001 0.007 17.1 1.1 1 23 284 307 284 307 0.95 8 12 0.0029 0.2 12.5 3.9 2 23 339 361 338 361 0.91 9 12 0.0023 0.16 12.8 2.6 2 23 371 393 370 393 0.93 10 12 0.18 12 6.9 3.5 1 23 402 425 402 425 0.95 11 12 0.0061 0.42 11.5 1.2 1 23 434 457 434 457 0.96 12 12 0.55 38 5.3 4.3 1 17 466 482 466 483 0.94
Sequence Information
- Coding Sequence
- ATGTCTTCTTCGGATGTTAACCTTCAAACTATTCGATGTCGGTACGAATCCGAATGTAAATTCTCTTTTACTGATCATTTAAAAGGATACCATCAAGAACCTTCATTGGACTCTTACAGTTGTGCCTCCAGAATCGAAGCGTTTCTATGCAAAATTTGTGATTACAAAAGTAAATTTCAAGTTGATATCTGTCAACATAAGAAAAGGGCTCACAAAATCAAAACACTTCCAACAAATACGGTGAACTATAATAAAAATGGAATCAAACTAAAACCTGAAACAATAGAGTTTGACCACAGAAACATTCAATGTTTTTATTGTGGATTATTTACTTTTTCTACTGTTTTCTTATGTAAACATTTCGAAACTTGTAGGGTTAAAAATGATAATAATCAAACGGTGATAAAAGCGAATCACCAAAATATCTCCGATTATGAAGCAAAATTGAGTTCAGTTTGTCGTAGTCACTGGTTTGAATGCGACTTTTGCGATTATAAAACTCGATTGAAAATAAATTTGAAAACCCACCAAATCACTCAGCATAGTGTTGTTACAGAAATCAACTGGTTTGAATGTCAATTTTGTGAGTATAAAGGGAAATTGAAGAGTCAATTGAGAAAGCACCAATTACGTAAACATATATTTGCGATGAAGTGGTTAGAATGTCAATATTGTGAATATAAAGCGAAACTGCTGAATGAATTGAAACAACATCAAGTCATAAAGCATGGTGTAAATATGGTAAAAAATAGGTTTGAATGCAAAGTTTGTGAATATCAAGCGAAGCGGAAGTGTCATTTGAAACAGCACCAAATCAATAAACACACTCCGTCTAATGAAGTCAACTGGTTTGAATGTAACGAGTGTGAATATAAAGCAAAGCAAAAAAGCTACTTGAATAGACATATAATTAATAAACACTCTGTTGTTGCAGATATCAAATGGTTTGAATGTGAGAATCATGAATACGAAGAGACTGAAAGCGGTAGTTCTAGAACCCAAGTTAATTGGGTAGAATGTCAATATTGTGATTATAAAGCAAAACATAAAAGCGATTTGAAACGGCACCATGTTAATAGACATGCTTCTAGCACTGGTGTTAGGTGGATGAAATGTCAATATTGTGAATATAAAGCGAAACAGAAAAGTGACTTGAAACGACACAATAATAATAAACATGCTGCTAGTAACGAAATTGAATGGTTTGAATGCGGGAATTGTGAATATAAATCTAAATTGAAGAATAATATGAAACATCATCAAATCAATAAGCATTCTTCTGATATGAATATCAACTGGTTTGAATGCCAGGAGTGTAAATATAAAATGAAAGTGAAAGGGAATTTGAAATTGCATCAAATTAGTCGTCATACTGCTGGAAGTGAGATTACTTGGTTTTATTGCCAATATTGTAAGTTTAAGTCGAAACGAAAACATAACTTAAAAACATCAAATTGGCCAACACGTTGA
- Protein Sequence
- MSSSDVNLQTIRCRYESECKFSFTDHLKGYHQEPSLDSYSCASRIEAFLCKICDYKSKFQVDICQHKKRAHKIKTLPTNTVNYNKNGIKLKPETIEFDHRNIQCFYCGLFTFSTVFLCKHFETCRVKNDNNQTVIKANHQNISDYEAKLSSVCRSHWFECDFCDYKTRLKINLKTHQITQHSVVTEINWFECQFCEYKGKLKSQLRKHQLRKHIFAMKWLECQYCEYKAKLLNELKQHQVIKHGVNMVKNRFECKVCEYQAKRKCHLKQHQINKHTPSNEVNWFECNECEYKAKQKSYLNRHIINKHSVVADIKWFECENHEYEETESGSSRTQVNWVECQYCDYKAKHKSDLKRHHVNRHASSTGVRWMKCQYCEYKAKQKSDLKRHNNNKHAASNEIEWFECGNCEYKSKLKNNMKHHQINKHSSDMNINWFECQECKYKMKVKGNLKLHQISRHTAGSEITWFYCQYCKFKSKRKHNLKTSNWPTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -