Pser013390.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995155.1:22099563-22101044[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2 1.6e+02 3.4 0.5 1 23 26 48 26 48 0.94 2 12 1.6 1.1e+02 3.9 4.3 3 23 117 138 115 138 0.94 3 12 0.031 2.2 9.2 2.2 1 23 147 170 147 170 0.92 4 12 0.16 11 7.0 7.3 1 23 179 202 179 202 0.97 5 12 0.041 2.9 8.8 3.8 2 23 216 238 215 238 0.92 6 12 0.055 3.9 8.5 1.6 1 23 247 270 247 270 0.94 7 12 7.2 5e+02 1.8 0.3 9 23 280 295 279 295 0.87 8 12 0.00029 0.02 15.6 0.6 2 23 304 326 303 326 0.95 9 12 0.00014 0.0095 16.7 2.6 2 23 336 358 335 358 0.93 10 12 2.6e-05 0.0018 18.9 2.7 1 23 367 390 367 390 0.97 11 12 0.00032 0.023 15.5 2.7 2 23 399 421 398 421 0.96 12 12 0.0003 0.021 15.6 2.2 1 23 430 453 430 453 0.96
Sequence Information
- Coding Sequence
- ATGAATAATCACCTGAAGACTTACCATAGGAACGTTTCATTCAAACCATTCGATTGCGCTATCAAAATTGATTCGTATCCTTGCGAACTTTGTTCTTTCAATTCCGAATCACAGTTAGTTTTATATCGACATAGAGTTAAACATCGAACGCTAAATCCTCAATGGATAAACGCTACGAACAACTTTATCAAGCAAGAACCTCTCGATTTTGAAGAAGACACACCTGATTTCAGTTTGATAGAATTTCAATGTTCTGCCTGTAGATTAGTTACGTTTTCGAAACTTTTTTTGTCACAACATTCGATTAGTTGTAACAAAACAGTTCAAGTTGAAAGAAATTTCAATTGTTGTCCGCATTGTTCTTACAAAACTCAAGTTAGAGGTTATTTCTTGAAACATTTGAATCTTAACCATATTCCTGACAACGAGGTTAAGTGGTTTCAATGTTCCGATTGCAGTTATAAAACGAGATTTAAAGCGAATTTGAAACCTCATCGTATATACAGGCACGTGCCGAGTGACGAAATCATATGGTTTGAATGCAAGTTTTGTAGTTATCGTACTCGTTTCAATAATCATTTTAAAACGCATCAAATCAGAAAACATTCGAAGAATCCCCCACCGAAACCGTTGGGAAAATGGTTAGAATGCGACGAATGTAATTATAAAACACGATTGAGACGTAATTTGAGAACCCATCAATTCCACAAACACACCTCATGTGCCCAAATCAAATGGTTTGAATGCAGCGAATGCGATTTTAAAACTAAAGTAATGAGCCGTTTGAAAAGTCATCGAATCAATAAGCACGCACCGAAAGACGAAATCCCATGTTATACGGTGAAGGACGCGAGATCTTTGAAGCTACATCGATTAACGAAACACGGCGACGGTGAAGTGAAATTATGGAAATGTAATGATTGCGATTATGAAACTCCCCGAAGGAATCAATTGAAGCTACATCAAATCAGCAAACACGATTCAACTATCGGAATCGATTCGTTAATTTGTAACGATTGCGGTTATAAAACGCGACATTTAAGCCATTTGACCACGCACCAAATTAACGTGCATTCGTCAACTGAGGGCATCGATTGGTTTAAATGTAACGAGTGCGATTTGAAAACGAAATACAAGGGAACTTTGAAAAGGCACCAAAGGTTGCAACATCAAGTCGATGATAGGATGCTATTGAAATGCAACCAATGTGATCTACAAACGAAGTACAAAGATACGTTGAAACGACATCAAATGAAACAACATGATTCGAACAACGCCAACAAATGGTTTAAATGCGACATTTGCAGTTATAAATCGAAACGAAACTATTATTTATTGAAACATCAAGCCATCAAACATAAATGA
- Protein Sequence
- MNNHLKTYHRNVSFKPFDCAIKIDSYPCELCSFNSESQLVLYRHRVKHRTLNPQWINATNNFIKQEPLDFEEDTPDFSLIEFQCSACRLVTFSKLFLSQHSISCNKTVQVERNFNCCPHCSYKTQVRGYFLKHLNLNHIPDNEVKWFQCSDCSYKTRFKANLKPHRIYRHVPSDEIIWFECKFCSYRTRFNNHFKTHQIRKHSKNPPPKPLGKWLECDECNYKTRLRRNLRTHQFHKHTSCAQIKWFECSECDFKTKVMSRLKSHRINKHAPKDEIPCYTVKDARSLKLHRLTKHGDGEVKLWKCNDCDYETPRRNQLKLHQISKHDSTIGIDSLICNDCGYKTRHLSHLTTHQINVHSSTEGIDWFKCNECDLKTKYKGTLKRHQRLQHQVDDRMLLKCNQCDLQTKYKDTLKRHQMKQHDSNNANKWFKCDICSYKSKRNYYLLKHQAIKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01283755;
- 90% Identity
- -
- 80% Identity
- -