Pser009717.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995152.1:29959005-29960489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 83 4.3 0.8 1 18 108 125 108 129 0.65 2 12 5.5e-05 0.0038 17.9 0.9 1 23 144 167 144 167 0.97 3 12 0.019 1.3 9.9 1.5 1 23 176 199 176 199 0.93 4 12 0.00055 0.039 14.7 1.7 1 23 208 231 208 231 0.96 5 12 0.00034 0.024 15.4 0.9 1 23 240 263 240 263 0.96 6 12 0.0019 0.13 13.1 3.6 1 23 272 295 272 295 0.96 7 12 0.022 1.5 9.7 2.4 1 23 304 327 304 327 0.95 8 12 0.017 1.2 10.0 6.2 1 23 336 359 336 359 0.97 9 12 0.00019 0.013 16.2 1.6 1 23 368 391 368 391 0.96 10 12 0.025 1.7 9.5 0.9 1 23 400 423 400 423 0.94 11 12 0.009 0.62 10.9 5.7 1 23 432 455 432 455 0.96 12 12 0.00018 0.013 16.3 2.9 1 23 464 487 464 487 0.97
Sequence Information
- Coding Sequence
- ATGACTTTTTCAATTTCCATAATCAATATTACTAAATACGGATGTAATCTTTGCCCATACCAATCCCAATGGGAGTTTGCCATTAACAACCATTGGAAACGCCATAATCAAGATATTCTATCCAATCCTGTTGATTGTTCATCTGAGATTGCTAAATATCAATGCAAAGTTTGTTCTTACAAATCAGAATTTCTGGTAGACCAACATCTGTTACAACACCAGAAATTTGTAACTTCAGCGAAACACAGTAAGGTTGAAGATCCTTTCTTGCCACACGAACTCTTGGAAATAAAATTTGAAACAGATTTTTATGGCACTGAACATCAATGTCACCAATGTGGATTACTTACATTTTCCAAACTTTTCTTACTCAACCATTCAATGCGTTGTGAAAAGAAAACTAAAACCAATGGTTATCAAATTGCATTATTTGAATGTTCAGACTGTGGATATAAAACTAAAAATAAGAGCATTTTGAGACGCCATCAAATGATTGAACACGCTCCAGATTCTCAAATTAACTGGTTTGAATGTCAGAATTGTGAATATAAAGCAAAATATAAAGCCTACTTAAAACAGCATCAATTCCTTGTACACGCTCATAGCTCCGAAATCAACTGGTTTGAATGTCAGGATTGTGAATATAAAGCAAAAAAGAAGAGCTATTTAAAAAAGCATCGAATCAGTGTACACACTGCTAATTCTGAAATCAATTGGTTTGAATGTCAGTATTGTGAATATAGAGCAAAACAGAAAATCCAGTTACAAAAACATCAAATCAGTGTACACACCGCTAATTCTGAAATCAATTGGTTTGAATGTCAATATTGTGAATATAAAGCGAAACAGAAAATTCATTTAAAAAGGCATCAATTTAGTGTTCATACTGTTAGTTCTGAAATCAATTGGTTTGAATGTCAGGATTGTGAATTTAAATCGAAATATGAAATTCATTTAAAAAAACATAAAATCAGTGCACACACTGCTAATTCTGAAATCAATTGGTTTAAATGCCAAGATTGTGAATATAAAGCGAAACATAAAATCTATTTAAAACGACATCACAAAAATGTGCACGCTGCTAGTTCTGAAATTAATTGGTTTGAATGTGAAAATTGTGAATATAGGGCGAAACAGAAAAGCACTTTGAAACGACATCAAAGCATTAAGCACACTGGTAGTTCTGAAATTAAATGGTTTGACTGCCAGGATTGTGAATATAAATCGAAACTCCAAGCCACATTGAAACAGCATCGAATCAATATGCACGCTACTAGTTCTGAAATCAAATGGTTTCATTGTCGGCATTGTGAGTTTAAAACGAAACAGAATGGCGACTTAAAACGACATCAAATTAGTATGCACGTTGCAAATTCCGAAATTAAATGGTTTGAATGTCAGGATTGTGAATATAAAGCGAAACGGAATAGCACTTTAAATCGACATAGGAAGAAAAAGCATGCTCCTAATTCCGAAATTAAATAA
- Protein Sequence
- MTFSISIINITKYGCNLCPYQSQWEFAINNHWKRHNQDILSNPVDCSSEIAKYQCKVCSYKSEFLVDQHLLQHQKFVTSAKHSKVEDPFLPHELLEIKFETDFYGTEHQCHQCGLLTFSKLFLLNHSMRCEKKTKTNGYQIALFECSDCGYKTKNKSILRRHQMIEHAPDSQINWFECQNCEYKAKYKAYLKQHQFLVHAHSSEINWFECQDCEYKAKKKSYLKKHRISVHTANSEINWFECQYCEYRAKQKIQLQKHQISVHTANSEINWFECQYCEYKAKQKIHLKRHQFSVHTVSSEINWFECQDCEFKSKYEIHLKKHKISAHTANSEINWFKCQDCEYKAKHKIYLKRHHKNVHAASSEINWFECENCEYRAKQKSTLKRHQSIKHTGSSEIKWFDCQDCEYKSKLQATLKQHRINMHATSSEIKWFHCRHCEFKTKQNGDLKRHQISMHVANSEIKWFECQDCEYKAKRNSTLNRHRKKKHAPNSEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -