Pser012074.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995155.1:9103307-9104914[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.07 4.9 8.1 3.7 1 23 52 75 52 75 0.96 2 14 6.9 4.8e+02 1.9 0.6 3 20 114 131 113 133 0.87 3 14 0.00028 0.019 15.7 0.6 1 23 153 176 153 176 0.95 4 14 0.011 0.74 10.7 4.2 1 23 185 208 185 208 0.95 5 14 0.00037 0.026 15.3 3.2 1 23 217 240 217 240 0.97 6 14 1.1e-05 0.00074 20.1 2.0 1 23 249 272 249 272 0.96 7 14 0.0074 0.51 11.2 3.2 1 23 281 304 281 304 0.97 8 14 0.00051 0.035 14.9 4.6 1 23 313 336 313 336 0.96 9 14 8.7e-05 0.0061 17.3 1.7 1 23 345 368 345 368 0.95 10 14 0.0013 0.092 13.6 0.9 1 23 377 400 377 400 0.95 11 14 0.19 14 6.7 5.7 1 19 409 427 409 432 0.90 12 14 0.015 1 10.3 2.1 1 23 441 464 441 464 0.95 13 14 0.01 0.7 10.8 3.3 1 23 473 496 473 496 0.95 14 14 0.0014 0.098 13.5 5.0 1 23 505 528 505 528 0.98
Sequence Information
- Coding Sequence
- ATGTATCGGTCAAATTGTACTTCTTTTATTAACTATCAGTGTTTTGACCGCCAGTTGGAATTTGGTTGGGATCTCTCCTTAATTAATCATTTGAGACGTCATCATGAAGAAGATTCTTCGCATCTCTTCAGCTGCTCAATTGAACCTGACAGTTATCGATGCAAAATTTGCAGCTATAAAACCAATTTCCGAGTTTGTCTTCTCCAACACCAACAAGAGGACCATGCAAGCAAAACTCCTTTTGAACACGTATTAAACGCAATCGACCCTCAGTTTATCAAACAAGAGCCTCTCGATATAAAAACCGAAATAGTTAATAGCAGCGAAACTGAAAATTACTGTTTTCAATGTGGATTATCAACGTTCTCAACACTTTTCTTATTTAAACACTTAGAAAATTGTTATGTTGCTACAAAAAGGCTAAGTAATTATGTCACAGATTCTGAAAGAGCGAGGTTTGCGTGTAATGCATGTGGTTATAAAACGAAACGAAAAGCAAATTTGAATCTGCACCAAATAAGCAGGCATGCAACTGATTCGGAAATCAAATGGTTTGAATGTTGTGATTGCACCTACAAAACTAAGCGAAGCGGTTATTTGAAGCTGCATCAAATCAATAAACACAATCTTGATGTACAAATAAAATGGTACCAATGTAATGATTGCAATTATAAAACGAAAGAGAAAAATAAGTTGAAGCGACATCGCAATAATATTCACGCTTCTGATACTGAAGTAGCATGGTTTGAATGTCAGGATTGTGGTTACAAATCGAAACGAAATAGTGACTTGAAAAAACATCGAATCAGCAAACATGCGGTAGGTGTTAAAGTTAAATGGTTTGAATGTTGCGATTGCACCTACAAAGCGAAACGAAGCGCTTACTTAAAATGGCATCAAATCAAGAAACATAGTGGCAATGTTGAAATAAGATGGTTCCAATGTAATGACTGTAATTACAAAACAAAAGAAAACAGCAAGTTGAAACGACATCACAATAACATTCATGCTGCCGATACCGAAATCTCATGGTTTGAATGTAAATTATGTGATTATAGAACCAAACAAAATTCTCTTTTAAAACAACATCAAATAAATAACCATGCATTAGATGAAGACATCAATTGGTTTGAATGTCCCGATTGTGTTTACAAAACTAAACGAAGTGGCTACTTGAAACTGCATCGAATCAATAAACACGGTCTTGATGTTGCAATCAAATGGTTTTATTGTAACGATTGTAGTTATAAATCAAAAGAAAACAGTAAATTGAAACGACATTGTAACTATATGCATGTTGCTGAAAATGAAATTGAATGGTTTGAATGTAGAGAATGTGATTATAAAACGAAACGAATTTTTTTATTAAAACAACATCGAATCAATAAACATGCGTTGGATGCAAATATTAAATGGTTTGAATGCCGCGATTGCACTTATAAAACTAAAAAAAATTCGTATTTAAAACTGCACCGAATCAACAAACATAGTCTCGATGCTCAAATAAAGTGGTTCCAATGTGGAGATTGTAGTTACAAAACAAAAGAAAGCAGCAAATTGAAACGACATCATAACACAAAACATTTGGTTAAAATTAAGGGTAAATGA
- Protein Sequence
- MYRSNCTSFINYQCFDRQLEFGWDLSLINHLRRHHEEDSSHLFSCSIEPDSYRCKICSYKTNFRVCLLQHQQEDHASKTPFEHVLNAIDPQFIKQEPLDIKTEIVNSSETENYCFQCGLSTFSTLFLFKHLENCYVATKRLSNYVTDSERARFACNACGYKTKRKANLNLHQISRHATDSEIKWFECCDCTYKTKRSGYLKLHQINKHNLDVQIKWYQCNDCNYKTKEKNKLKRHRNNIHASDTEVAWFECQDCGYKSKRNSDLKKHRISKHAVGVKVKWFECCDCTYKAKRSAYLKWHQIKKHSGNVEIRWFQCNDCNYKTKENSKLKRHHNNIHAADTEISWFECKLCDYRTKQNSLLKQHQINNHALDEDINWFECPDCVYKTKRSGYLKLHRINKHGLDVAIKWFYCNDCSYKSKENSKLKRHCNYMHVAENEIEWFECRECDYKTKRIFLLKQHRINKHALDANIKWFECRDCTYKTKKNSYLKLHRINKHSLDAQIKWFQCGDCSYKTKESSKLKRHHNTKHLVKIKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -