Pser012889.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995155.1:16674633-16676123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 97 4.0 0.9 1 23 13 35 13 38 0.65 2 13 0.6 42 5.2 0.4 1 23 53 76 53 76 0.94 3 13 6.5 4.5e+02 1.9 0.8 2 20 113 131 113 133 0.90 4 13 0.00016 0.011 16.4 1.1 1 23 168 191 168 191 0.95 5 13 0.00038 0.026 15.3 3.8 2 23 201 223 200 223 0.95 6 13 0.0033 0.23 12.3 5.0 1 23 232 255 232 255 0.96 7 13 3.5e-05 0.0024 18.5 0.9 1 23 264 287 264 287 0.93 8 13 0.00038 0.026 15.3 3.2 1 20 296 315 296 316 0.96 9 13 0.00027 0.019 15.7 2.7 1 23 328 351 328 351 0.98 10 13 0.99 69 4.5 7.5 2 23 361 383 360 383 0.95 11 13 0.00063 0.044 14.6 2.8 1 23 392 415 392 415 0.97 12 13 9.5e-05 0.0066 17.2 4.3 1 23 426 449 426 449 0.95 13 13 0.00018 0.013 16.3 3.1 1 23 458 481 458 481 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCTCCAACTCTTAATTGCCCTATTCTAAACTATGAATGCCTTCAATGTCCCTTCAAGTCGGCCTGGAAGTTTGGCCTCACCTACCACTTGCAGCGACACCGACAAAAAAATTTGTTAGAACTTTTCAATTGCTCAACTGCAACTCAAGTTTATCCATGCAACTCTTGTGATTATCAGGCAGTTTTGAGAGTTGATTTGTATAAACATAAGCTAAGTAAACACGTGATTGAGGAGCCAGGCCAGAATGTCAACTGCAGTGAAAATAACTTCATTAAACAAGAAATTTTACAATTAAAACCTGAAATAATTGAATCAGGTTATGACAACAATCAATGTTTTCGTTGTGGTTTGTTTATATTTTCCAAAGTGTTTTTATTTAAACATTATGAAAAATGTGGAATGAAAAACAAACGAAAATCTGAGTATTATGAAAGAAAAGAAAAAAACTTGAAGCATGATAACGATAAATTTATTTATAGTTTTAAGATCAAATGGTTTGAATGCAATGAATGTGGTTACAAAACAAAAAAGAGGAATGAATTGAAAACGCATCAAGTCATAAATCACGCTGCCAGCACTAAAATCAATTGGTTGAAATGTGAAATTTGTGACTATAAAACTAAGTATAGGAGTCATTTGAAACAGCACCGAATCAGTAAACATGCTTCTAGTGATGAAATCGAGTGGTTTGAATGCCAGGATTGCGAGTATAAAACTAAATATAAAGCCCATTTTAAGCGACATCGAATCAGCAAGCATCCTGCTATTTCTGAAATTAAGCGGTTTGAATGCCCTAACTGTGATTATAACACAAAACAGAAGAGCAATTTGAAAATGCACTACGTCATAAATCACACTGACGGCACTGAAATCAATTGGTTTAAATGTCAAATTTGTGAATATAAAACTAAATATAAAAGTCATTTGAAACGGCACCGAATCTGTAACCACGCTTCAGGCGATGAAATCGAGTGGTTCGAATGCCAGGAGTGTGAGTATAAAACTAAATATAAAAATGATTTAAAACAGCATCAAATGACTAAGCACGCTTCTAACGATGAAATCGACTGGTTAAAATGCCAAAAGTGCGAGTTTAAAACTAAATATAGAGGTCATTTTAAACAGCATCACATCAGCAAGCATACTGCTAATTCTGAAATTAAGTGGTTTGAATGCCCTATCTGTGATTACAAAGCGAAAGAGAAAAGCAAACTGAAACAGCATCATATGAGAAAACACACCAGCAATAACAACTTCAACATCAAGTTGTTTGAATGTCACGAATGTGAATATAAAACGAAACGAAAGAGCAATTTACAGCAACACCGGATTAATAAACATGTTGTTAGTAGCGAAATCGATTGGTTTGAATGTAATAAGTGTGAGTTTAAAACGAAACAGAAGAAGAATTTGAAGGCGCATCAAATTCGTAGACATGTTGCGGAAATCGATGAGAAACGGTCTAGTTCAAAATTGTTGAATTAA
- Protein Sequence
- MGSPTLNCPILNYECLQCPFKSAWKFGLTYHLQRHRQKNLLELFNCSTATQVYPCNSCDYQAVLRVDLYKHKLSKHVIEEPGQNVNCSENNFIKQEILQLKPEIIESGYDNNQCFRCGLFIFSKVFLFKHYEKCGMKNKRKSEYYERKEKNLKHDNDKFIYSFKIKWFECNECGYKTKKRNELKTHQVINHAASTKINWLKCEICDYKTKYRSHLKQHRISKHASSDEIEWFECQDCEYKTKYKAHFKRHRISKHPAISEIKRFECPNCDYNTKQKSNLKMHYVINHTDGTEINWFKCQICEYKTKYKSHLKRHRICNHASGDEIEWFECQECEYKTKYKNDLKQHQMTKHASNDEIDWLKCQKCEFKTKYRGHFKQHHISKHTANSEIKWFECPICDYKAKEKSKLKQHHMRKHTSNNNFNIKLFECHECEYKTKRKSNLQQHRINKHVVSSEIDWFECNKCEFKTKQKKNLKAHQIRRHVAEIDEKRSSSKLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -