Pser009215.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995152.1:24463835-24467074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00049 0.034 14.9 1.9 2 23 302 323 301 324 0.94 2 12 0.00028 0.02 15.7 2.4 1 23 334 356 334 356 0.98 3 12 0.0024 0.17 12.8 0.1 3 23 374 395 372 395 0.95 4 12 0.011 0.79 10.6 2.3 1 23 401 423 401 423 0.92 5 12 0.0016 0.11 13.3 2.1 1 23 429 451 429 451 0.93 6 12 0.076 5.3 8.0 0.1 2 23 459 480 459 480 0.95 7 12 0.044 3 8.8 2.1 3 23 499 519 497 519 0.93 8 12 0.062 4.3 8.3 2.4 1 23 523 545 523 545 0.94 9 12 0.0063 0.44 11.4 9.1 1 23 556 578 556 578 0.96 10 12 3.6e-05 0.0025 18.5 2.7 2 23 585 606 585 606 0.98 11 12 0.00033 0.023 15.5 0.2 1 23 612 634 612 634 0.98 12 12 6.9e-05 0.0048 17.6 0.6 2 23 640 661 639 661 0.97
Sequence Information
- Coding Sequence
- ATGGATTGGCAATGCAGAACATGTATGCATATGATAAAGGAACAAAATGCTGTAAGCGTTTTTGCTTTCGGTAATTGCGAAGAAATTATTTCTGATATGCTAATGCAATTTGCTCCTGTAATGGTATGCGATGAAGACTATCTTCCAAAGAATATTTGTACAAGTTGTTTGGAGAAGTTAAATGTAGGCTATGGTTTTCGAAAATTAATAATGACTTCAGATACACAGTTGCGTCGACAAATTGCCAAATTACAAAATATTGATGCTGAAGATGAAGTGGATGATTCGGAAGGAGCAGTGGAGGAAAATCTAATTGATTTCTCATTTCCAACGAGAGAAGAGGAAGTAAATGTGAAATTTGAAACTATTAATGAAGAAACAGGGTTTGATTTTGAAAGTAAGGCAGAACTCGATATTTCCATAAAAGGAGATACCAGTTTTACTATTGAAGACGAAATGGAATTTGTAGAAATTAAATGTAATCAAAATATTACAGACCAAGGCCATGACCAAGAAATTATGTTACCACAACTCATACCAGCCGCATTCGAGTTTGTGATTATAGAGGAATCAACAAACCAACTGGTGGAAGCTGAAGATTTGGCTGTGGAAGAAACCGGAAACGTCGTTAACACAGAAATTGGCCGTTTAAAAGGAAATGAAAAGAGAAAGAGTCGCAGTCTACCTAAAAACAAATTGTGTGAATCAGCTGCAAATCGCGACAGTATGGAGACAAATTGTTTCCCTCAGCCGAACGAGAAGGAGGAGAAATCTCAGGCAACAGAGGCAGATCCACAAAAGGACTCAAATTCTGACGAAACTAAGAGACTGGAGACAAAGTCATCTCAGAATTCACCACATCTACGAAACCGTTCTCAAACATCTTTGATGGAAAAAGTATTACCATGTTCACACTGCGATAAAAGATTTGCCGCTGAACAGTATCTAAACCTCCATTTGAAGGTTCACCATAAAAAAAAATCAACTAGTGAAAAGGCTTTTAAATGTACACAATGTGACAGACAATTTATAAAGAAACAATATTTAGATCTTCATCAGAAAGTTCACGTTACTTTAAAAACGAATAGTAATTCCCAACAAAACAAAACAACGTCAAACTGTCAGTATTGTGGTGAAGCGTTTTTATCAAAATATAGTCTTGAAGACCATGTAAATGTCTTGCACAGGGATAAGCCGCTGTATGCGTGTTCCCTTTGTGACCAGCGGTTTAAAAAATCACTTGATTTGAAGATTCACTGTAACGTACACAAAAAGACAAAATTGTATTCATGTAAAATATGCAGTAGTAGGTTTAGTACGACAACGACGTTGAAACGACACACCGTAGACCATATTTTAAAGCAAAGTGGTCGGGAATGTAAAATTTGTAACACAAGCTTTCTTTATGAAGATCCCTGGAACTCTCATATGATAATGCATAAATTGGGTCTCTCCGACCAAAATTTGCTTCCCACACAAAAAGACCCTCTACACTGCATCCATTGTAACATTATTTTTACTGATAAAGAAGTTTATAACACTCATATGAATATACATTGGAAAAGTTTTACATGTGGGGAATGTAATAGAAGCTTCTTCAAAAAAAAAATACGTAACAATCACATGACTGTTCATTTACGTGAGGAAGGATTTCCGAAGACCATGCATCATTGCACCAAGTGCAAAAAGATATTTAGTAAAAAAGTATCTCTTTTTAATCATATGCACCTACATGACAATGAAAAGGAAAGGAAATGTTTAGAGTGTAACAAGATTTTCAGAACAGTATGGCATCTTACACGTCATACAAGAGTTCATAATTTGAAAAAAGCTTACGAGTGCAACATTTGTGGTCAAACATTTACAGCAATGAACGATTTTGCTATTCATAAGAAGATTCATACATACGAAACCATACAATGTAGGCATTGTGGCTTGAAATTTCCCGGAAAGGAACTTTTAAAAACACACATGATTATTCATAGTAACCCATAG
- Protein Sequence
- MDWQCRTCMHMIKEQNAVSVFAFGNCEEIISDMLMQFAPVMVCDEDYLPKNICTSCLEKLNVGYGFRKLIMTSDTQLRRQIAKLQNIDAEDEVDDSEGAVEENLIDFSFPTREEEVNVKFETINEETGFDFESKAELDISIKGDTSFTIEDEMEFVEIKCNQNITDQGHDQEIMLPQLIPAAFEFVIIEESTNQLVEAEDLAVEETGNVVNTEIGRLKGNEKRKSRSLPKNKLCESAANRDSMETNCFPQPNEKEEKSQATEADPQKDSNSDETKRLETKSSQNSPHLRNRSQTSLMEKVLPCSHCDKRFAAEQYLNLHLKVHHKKKSTSEKAFKCTQCDRQFIKKQYLDLHQKVHVTLKTNSNSQQNKTTSNCQYCGEAFLSKYSLEDHVNVLHRDKPLYACSLCDQRFKKSLDLKIHCNVHKKTKLYSCKICSSRFSTTTTLKRHTVDHILKQSGRECKICNTSFLYEDPWNSHMIMHKLGLSDQNLLPTQKDPLHCIHCNIIFTDKEVYNTHMNIHWKSFTCGECNRSFFKKKIRNNHMTVHLREEGFPKTMHHCTKCKKIFSKKVSLFNHMHLHDNEKERKCLECNKIFRTVWHLTRHTRVHNLKKAYECNICGQTFTAMNDFAIHKKIHTYETIQCRHCGLKFPGKELLKTHMIIHSNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -