Pser020699.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995154.1:20712999-20714705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00014 0.0098 16.6 0.9 1 23 15 38 15 38 0.97 2 16 1.8 1.3e+02 3.7 0.3 3 20 72 89 70 91 0.90 3 16 0.00025 0.017 15.8 3.6 1 23 123 146 123 146 0.96 4 16 0.00031 0.021 15.5 1.1 1 23 155 178 155 178 0.94 5 16 0.0001 0.0071 17.1 3.1 1 23 187 210 187 210 0.95 6 16 0.0057 0.4 11.6 2.7 1 23 219 242 219 242 0.92 7 16 0.00014 0.0098 16.6 1.7 1 23 251 274 251 274 0.97 8 16 0.084 5.9 7.9 4.6 1 23 283 306 283 306 0.95 9 16 0.011 0.79 10.6 5.7 1 20 316 335 316 339 0.96 10 16 0.0058 0.41 11.5 3.4 2 23 349 371 348 371 0.94 11 16 0.00095 0.066 14.0 4.2 1 23 380 403 380 403 0.95 12 16 0.0014 0.098 13.5 2.8 1 23 412 435 412 435 0.96 13 16 0.002 0.14 13.0 1.6 1 23 444 467 444 467 0.92 14 16 0.028 2 9.4 9.5 1 23 476 499 476 499 0.96 15 16 0.0047 0.33 11.8 0.5 1 23 508 531 508 531 0.95 16 16 0.00058 0.041 14.7 3.0 1 23 540 563 540 563 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTAGGTTGTTTAAATTGCTCAGCAGACGTTGAACTTTATTCATGCAAAATTTGTGGTTATGAAACGGAATCTCTAGTTAATTTATTCAAACATCGCAAGAGTATGCATGCATCCAAAACAATACTGTGGAGGAATCTAATAAACAACAGTGAAGTTACGTTTATTAAACAGGAACCTTTGGAGGTAACATCTGAAGGAGAGGACAACTGTTTTCAATGTGGATTAGTGTCATTTTCTAAAGTTTTTCTGTTTAAACATGCCGAAAAATGTGTTGAAATTCAAAAGGGAATTGATTCTAGTTTTCAAATAGAACTGAAAAAAGTTAAGGAAGAATGGGGTTTGAATAATAAAACCGGGTTGTTTAAGTGCTCCTACTGTGAATATACAGGGAAGACTAAAAGTAATTTCAAGCAACACCAAATTAATAAACACACTGCTTTGACTGAAATTGACTGGTTTGTATGTGAGGATTGTGATTATAAAGGAAAAAGCAAGAACAATTTGAGACAACACCGGATTTATAACCACACTGATGTTAGTGAAATCAAGTGGTTTGAATGTCCGGACTGCCAATATAAAGCAAAAACTAATAGCCATTTGAAACGACACAAAATTAGTAAGCATTTGGCTACTACTGAATCTAATTTGTTTTTATGCAAAGACTGTGATTATAAAGCAAAAACCAAGAATCTTTTGCAACATCATCTAATCAATAAGCACTCGACAATTACAGAAATCAACTGGTTTGAGTGTCAGGACTGTGGATATAGGGCAAAAACTAGGGGTTATTTAAACCGACACCGATATACTAAACATGCTGCCTTTACTGAAATCAATTGGCATGAATGCGAACAGTGTCCATATAAAGCAAAAACTAAAAATTACCTGAAACTGCACCATATTAGAAAACACATCATTGCCACTCCTAAAATGAACTGGTACAAATGCGAGTACTGTGACTATAAAGTGGACAACAAAAGATATCTGAAACATCACCAAATCTGCAATCATGCTGCTAGTCCTGAAATCAACTGGCTTCAATGTCCACACTGCGAATACAAAGCAAAGAGAATGAGTCATTTGAAAGAGCATCAGGTCAGTAAACACGCAGCCACTGCTGATATCAATTGGTTTGAATGTCAGAATTGTGAATATAAAGCCAAAACTAAGAGTCATTTGAAAAAACACCAAATCAATAAACACACGGCGAGCACAGAAATCAACTGGTTTGAATGTCAGTATTGTGAATATAAGGCGAAAAGAAGAGGTCATTTGAAAGAACATCAAATCAGTAAGCATGCTGACACTGCTGAAATAAACTGGTTTGATTGTCCGTTTTGTGAATACAGAGCTAAAATGAAAAGTCATTTGAAACGGCATCAAATCGATGTTCATGCTGCTAGTAGTGAAATTAATTGGTTTGAATGTCATAATTGTGATTATAAATGTAAACAAAGGAGCTGTTTAAAATTACACTATATCAGTAAGCATGCTGCTTTAACTGAAATTGAATGGTTTGAATGCCAGGAGTGTGAATATAAAGCAAAAACTAAAGGCGGATTGAAATTGCATCAAATAAATAAACATGTTGCTAGTACTGAAATCAAGTGGTTTGAATGTGAGGATTGTGAATATAAAGCAAAACGAAGAATTCACTTAAGAAGACATCAACTCAGGAAACATGCTGTTAAGATGATGTAA
- Protein Sequence
- MSVGCLNCSADVELYSCKICGYETESLVNLFKHRKSMHASKTILWRNLINNSEVTFIKQEPLEVTSEGEDNCFQCGLVSFSKVFLFKHAEKCVEIQKGIDSSFQIELKKVKEEWGLNNKTGLFKCSYCEYTGKTKSNFKQHQINKHTALTEIDWFVCEDCDYKGKSKNNLRQHRIYNHTDVSEIKWFECPDCQYKAKTNSHLKRHKISKHLATTESNLFLCKDCDYKAKTKNLLQHHLINKHSTITEINWFECQDCGYRAKTRGYLNRHRYTKHAAFTEINWHECEQCPYKAKTKNYLKLHHIRKHIIATPKMNWYKCEYCDYKVDNKRYLKHHQICNHAASPEINWLQCPHCEYKAKRMSHLKEHQVSKHAATADINWFECQNCEYKAKTKSHLKKHQINKHTASTEINWFECQYCEYKAKRRGHLKEHQISKHADTAEINWFDCPFCEYRAKMKSHLKRHQIDVHAASSEINWFECHNCDYKCKQRSCLKLHYISKHAALTEIEWFECQECEYKAKTKGGLKLHQINKHVASTEIKWFECEDCEYKAKRRIHLRRHQLRKHAVKMM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -