Pser001128.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- prdm10
- Assembly
- GCA_905333025.1
- Location
- HG995158.1:9749484-9752919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0046 0.32 11.9 0.3 2 23 235 257 234 257 0.96 2 12 0.0027 0.19 12.6 0.1 2 23 353 374 352 374 0.96 3 12 0.0063 0.44 11.4 4.4 2 21 379 398 378 399 0.93 4 12 8.6e-05 0.006 17.3 1.8 1 23 404 427 404 427 0.93 5 12 2.7e-06 0.00019 22.0 2.2 1 23 462 484 462 484 0.98 6 12 0.11 7.4 7.6 0.2 3 23 496 516 494 516 0.96 7 12 9.8e-06 0.00068 20.3 1.5 1 23 521 543 521 543 0.98 8 12 2.1e-05 0.0015 19.2 3.0 3 23 551 571 549 571 0.98 9 12 0.00017 0.012 16.4 2.9 2 23 578 600 577 600 0.97 10 12 9.1e-06 0.00064 20.4 0.5 1 23 609 632 609 632 0.98 11 12 0.0001 0.007 17.1 2.2 1 23 669 692 669 692 0.98 12 12 2.5e-05 0.0017 19.0 0.2 1 23 704 727 704 727 0.98
Sequence Information
- Coding Sequence
- ATGGATATTTCAGCAATTTCCGAAACAACATTAACCGTAGAAGTTGCCCAAATATGTTGTATTTGCGGTAAAAATCACAACTCAAAAAATTGTGATTTTGTGAAAATCACCAAACAAGTACCTGACAAAGAGATTCCATCCAAAGCGAAACTTTCCTTACCGGGATTCTTGCAATTACAAATTTTAACAGACGGTTCCTATTCTGTGATTACAAAAATTTTAATCGAATGTGGAACTCAGTTTGGTCCTTTTCAAGCGGGTAGAATGGAAACTTTAGATGCCGCGCAACTATTCCCTTTGAAAATTTTCGATGACAACTGCGAATATTATTTAGATACAAGTTACGAAAATAAGTGCAATTGGATGATTTTTGTTAGTCCCGCAGAAACTTTTGAAGAACAAAATCTCATTTGTTATCAAGATAACAAAAAAATTTATTTTGTTGCTATAAAGGAAATTGGCGCTGGAGGCGCGCTTAAAGTTTGGTATTCATCTTACTATGCGTTCAAGATGAAGAAAAATATTCTTAAAGCAGTAGAAGAGGATCCTTTAAAAAATATAGACATAAACACTCTTATTAAGAAACAACAGAATATTATGGAGAGAAAAACTTGGACCTGCAAGTTTTGTAGTCAAGTAGAGAACAACATTGTGGTGTTTGCCAACCACATGTTAGCGCATTATCGCGCTCAATTGAGGAAAACTTGCGAAATTTGCAACGCTAGTTTTATGTTGAAAAAAACCCTAGCGAGTCACTTGAAGATTGTTCATAATTCAAACTTACCGAATGTATACTCAAAAATTCCCGCAAAACCTCCAGAATTACCCTCCAAAACTCTTAACAGAGACGTAGCAGTCGGTGGTCCTTTACTCAATGATTTGTTTACTGATAGCTCAGATTTGCAACAACCTGATCTCGATCAGTTTGATCTTAGTATCGATAATCAAAACTTGCTTTTGGACACCGATCATTTAAATGTTGATAATTTGCTCAATGAAAACGTTAAAGACTTGGACCATTTCAACTTTGAAATTGACGATAACCAGAAGCAAATTGTTTGTGATATTTGCCTAAAACAGTTTGCCAACGTCAAACTACTTGTCACGCATTTGAGGCTTCATACTGGCGACCTTACGTGCCTCAAATGCCTTAAGATTTTTTGCCGCAAAGAAAACTTGAAAACCCACATCTGCAACTTGACCCGCGCTTTCAAATGCGATTTATGTTCGAAAACCTATACTCAACGTAAATATTTATCGCGCCATCTAGCGGCGACTCACGCTAAAAAGTTTAATTGTATAAACTGCGGTAAATGTTACAATTGCAACAAGGAGTTGCAAGAACACAACTGTAGTGAAGTTTCAGCTGTTGATAAGGAGAAATTTATTTGTTCGTATTGTGATAAAGTTTTTTTCCGACAGATGTATTTGAGGAAACATCTTAAAATTCACGGGGTTACCGCTAAAACTGAATTGAGCACAATTTGTGAAGTATGCGGGTTGCTTCTCGAAACCAAAAACTCCTATTACCTCCACATGAAAAGCCACAAACCACCCAGTTATGTTTGCGAAATTTGCGATAAGAAATTCTGCAGACGGGACAGCCTTGATATTCATGTTTTAAAACATACAGCTGTTGCGCAGTTCGGCTGTACAGTGTGTTCCAAAAAATTTAAATTCAAGAAAAATCTCACGGAGCACATGCGCAATCATCAGGACGTCTCGCCTTTAAAGTGCAGTTCTTGCGAACTGAGTTTCAAACAACGCCGCACTTTAAACAAGCACGTCAGAACGAAGCATGGCAACTCCTCATTTTTGCAATGTTACCGATGTCCAATCTGTGATAAAGCCATAAAATTGAGGAGTTCTCTGAGTAGACACTTGAGACGAATGCATTCCACCGACATCGCCACCCTCAACTCAAACGACATAAAACCCAAATTATTTCGAATTCCCAAAAGCATTAACGAACCAACTAAAGAACAAAACGAAATCGAAACGGTTTTCAAATGTAATTCTTGCGAGTTAAGTTTTAAACAATTAAATACTTTAAACAAACACGTTAGGAGCACGCATGGAAAGAAAGTGTTGCCGTCATTTTTGCAATGTTATCGATGTCCAATTTGTGATAAAGCAATAAAATTAAGGAACTCGTTATGGAGACATTTAAGACGAGTTCATTCCGCTGACATTAACACACTTAATTCCAACGATATTAAACCAAAATTGTTTCGAATACCGAAAAGCGTCACTCAACCAATAAGCAATACTAAAGAACAAGACGAAATTCAAAATGAAATCGATACTCACATCGATAATTTATTAAACAATACTGATACTAGTTTGATCGATAAAGAAGCTGTCGATAGTTTAGTTGAGGAATTGGACATGGGAATTAAGAACGACGCCAAAAAATTGAATGAAGCGAAAGAAGTTTGTTTGTCGATTCCAGATTTGACTGAAGCCGATCAAGAAATTATGTTGGATAAAAACGCTTACATTTTGGACAACGGAACAATAGTTCAGCCACAACACGACTCCGATAAAGTTATTATTTACGTTTTGGACCAAGGGTTTTCATAA
- Protein Sequence
- MDISAISETTLTVEVAQICCICGKNHNSKNCDFVKITKQVPDKEIPSKAKLSLPGFLQLQILTDGSYSVITKILIECGTQFGPFQAGRMETLDAAQLFPLKIFDDNCEYYLDTSYENKCNWMIFVSPAETFEEQNLICYQDNKKIYFVAIKEIGAGGALKVWYSSYYAFKMKKNILKAVEEDPLKNIDINTLIKKQQNIMERKTWTCKFCSQVENNIVVFANHMLAHYRAQLRKTCEICNASFMLKKTLASHLKIVHNSNLPNVYSKIPAKPPELPSKTLNRDVAVGGPLLNDLFTDSSDLQQPDLDQFDLSIDNQNLLLDTDHLNVDNLLNENVKDLDHFNFEIDDNQKQIVCDICLKQFANVKLLVTHLRLHTGDLTCLKCLKIFCRKENLKTHICNLTRAFKCDLCSKTYTQRKYLSRHLAATHAKKFNCINCGKCYNCNKELQEHNCSEVSAVDKEKFICSYCDKVFFRQMYLRKHLKIHGVTAKTELSTICEVCGLLLETKNSYYLHMKSHKPPSYVCEICDKKFCRRDSLDIHVLKHTAVAQFGCTVCSKKFKFKKNLTEHMRNHQDVSPLKCSSCELSFKQRRTLNKHVRTKHGNSSFLQCYRCPICDKAIKLRSSLSRHLRRMHSTDIATLNSNDIKPKLFRIPKSINEPTKEQNEIETVFKCNSCELSFKQLNTLNKHVRSTHGKKVLPSFLQCYRCPICDKAIKLRNSLWRHLRRVHSADINTLNSNDIKPKLFRIPKSVTQPISNTKEQDEIQNEIDTHIDNLLNNTDTSLIDKEAVDSLVEELDMGIKNDAKKLNEAKEVCLSIPDLTEADQEIMLDKNAYILDNGTIVQPQHDSDKVIIYVLDQGFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -