Pser020951.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995154.1:24132029-24134052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5e-05 0.0034 18.0 4.0 2 23 154 175 153 175 0.97 2 11 0.0021 0.15 12.9 0.4 1 23 195 217 195 217 0.98 3 11 4.3e-06 0.0003 21.4 0.3 1 23 221 243 221 243 0.98 4 11 0.0019 0.13 13.1 1.9 1 23 249 272 249 272 0.96 5 11 0.00012 0.0086 16.8 0.2 1 23 278 300 278 300 0.96 6 11 0.00079 0.055 14.3 2.3 1 23 306 329 306 329 0.97 7 11 0.0026 0.18 12.6 1.4 2 23 341 363 340 363 0.97 8 11 3.4e-05 0.0024 18.6 0.7 3 23 376 396 374 396 0.96 9 11 2.7e-06 0.00018 22.0 1.4 1 23 402 424 402 424 0.98 10 11 3.1e-06 0.00022 21.8 0.1 1 23 430 452 430 452 0.98 11 11 0.28 20 6.2 1.1 1 17 458 474 458 476 0.91
Sequence Information
- Coding Sequence
- ATGCTACATAGAATTCAAGGGACTTGCCTGCAAACCGAACGAACACAAGTGTCAGTTGATGAACAAATGATTGCTTTCCATGGAAAGTTTCACGCAAAAACACTTCTGTACTCCGCTAAACAGGACGAAAATGAGGAAGAATTGGACGCGAGTGATAAAGGGAATTCTGAACAAGGTAATTCGAAAAGGAGAAATATTTTGGCGATTCCAGACAAGAGGGGACGTGTAAAAGAAGTCAAGCATTTGCCAAAATTTATGAACGAAGAGCAAAGAACAAGAAAACTATCGATTCGAAGTTGTGCAAAACCGAAGAGAGTTAAAACTAGTGCACCCTTGCAGAATTTCAAAAAATCATCAGCCAGCACCGACGACGACGAACCTCTTGCCTCCAGATTACACCAACATCAAATTAACAACACAGAAAAAATTAAAGCGAAACGAAACATGAACCGAACCTGGTCTTGTAAAAAATGTCAACAAACATTCAGAACATCAAAACTTTTAAGAACCCATCGCAAATCTCACACCCCAAAACTTCCCGCGAAAGACCCCGGATACAAACTCGACCCCATCCAAGACATTTACGTTTGCAACACTTGTTCCGCAGAATTTCAAAACAAAAACGAAGTCGAAAAACACACAATAACCCACGAAGAAGTTTTTAAATGTCAAATTTGTAACGAAAAATTCGAGAGAGCGTACAATTTGGGTACTCATATGGCGATTCATAGTGACGATAAACTTTTCAGATGTCCATTATGCGATTATAAAACCCCCAAACGCACCAGTCTTTTTATACACATTAACCACATGCATCTGAGGAAATTTTATTATTCATGCCCGACTTGCGGTAAAGGGTTCAATGATGCCGTTTTCTTTAAAGAACACGAAAACGAACATCTAGGACTAAGACCTTTTGTTTGTGTTGTTTGCAACAAGGATTTTATTTATTCCCGTTACCTCCACAATCACCAGATTCGGTACCATCGAGTCGGAATTGATGGAAAATTACTCCCGAATCAATGCAGTGTTTGTATGAAAACTTTTAGTAAAATCATTTCGTTACAGAAACATTTACAAAGGAATCACCTTAGAAATAAAATACCTCATGAGAAAAAACATTTGTGCGATTTGTGTGGAAAAGGTTTTGCGCAAAGAAACAAATTAATAATACACTATAGAGTACATACAGGGGTTAAACCGTATGTGTGTTCTTACTGCAGTAAGAGTTTTACGAAAAAAGATTATTTGGTTATGCATGAGAGGGTGCATAGTGGAGAAAAACCGTATTCTTGCGAGTATTGCGGAAAATCTTTCAGTCAAGGGGCGCCATTACGGATCCATCTTAGAGGACATACAGGGGAACGGCCATACGTATGCAATTTCTGTAATTGCGGTTTTGCTTCGAGGGGGGCTTTAAACTTTCATTGTAAGAATTGTAAAGGTGGCATATAG
- Protein Sequence
- MLHRIQGTCLQTERTQVSVDEQMIAFHGKFHAKTLLYSAKQDENEEELDASDKGNSEQGNSKRRNILAIPDKRGRVKEVKHLPKFMNEEQRTRKLSIRSCAKPKRVKTSAPLQNFKKSSASTDDDEPLASRLHQHQINNTEKIKAKRNMNRTWSCKKCQQTFRTSKLLRTHRKSHTPKLPAKDPGYKLDPIQDIYVCNTCSAEFQNKNEVEKHTITHEEVFKCQICNEKFERAYNLGTHMAIHSDDKLFRCPLCDYKTPKRTSLFIHINHMHLRKFYYSCPTCGKGFNDAVFFKEHENEHLGLRPFVCVVCNKDFIYSRYLHNHQIRYHRVGIDGKLLPNQCSVCMKTFSKIISLQKHLQRNHLRNKIPHEKKHLCDLCGKGFAQRNKLIIHYRVHTGVKPYVCSYCSKSFTKKDYLVMHERVHSGEKPYSCEYCGKSFSQGAPLRIHLRGHTGERPYVCNFCNCGFASRGALNFHCKNCKGGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -