Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: -
Assembly: GCA_905333025.1
Location: HG995154.1:35980504-35983810[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.9e-06 0.0002 21.9 1.7 1 23 227 249 227 249 0.98

2 9 2.8e-08 2e-06 28.3 1.6 3 23 257 277 255 277 0.98

3 9 0.00022 0.015 16.0 0.4 1 23 283 305 283 305 0.98

4 9 1.7e-06 0.00012 22.7 1.1 1 23 311 333 311 333 0.99

5 9 2.1e-05 0.0015 19.2 1.7 2 23 448 469 447 469 0.96

6 9 2.7e-09 1.9e-07 31.5 1.6 1 23 475 497 475 497 0.98

7 9 0.00062 0.043 14.6 0.6 3 23 505 525 503 525 0.97

8 9 9.1e-05 0.0063 17.2 0.9 1 23 531 553 531 553 0.99

9 9 0.018 1.3 10.0 0.8 1 23 559 583 559 583 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.9e-06	0.0002	21.9	1.7	1	23	227	249	227	249	0.98
2	9	2.8e-08	2e-06	28.3	1.6	3	23	257	277	255	277	0.98
3	9	0.00022	0.015	16.0	0.4	1	23	283	305	283	305	0.98
4	9	1.7e-06	0.00012	22.7	1.1	1	23	311	333	311	333	0.99
5	9	2.1e-05	0.0015	19.2	1.7	2	23	448	469	447	469	0.96
6	9	2.7e-09	1.9e-07	31.5	1.6	1	23	475	497	475	497	0.98
7	9	0.00062	0.043	14.6	0.6	3	23	505	525	503	525	0.97
8	9	9.1e-05	0.0063	17.2	0.9	1	23	531	553	531	553	0.99
9	9	0.018	1.3	10.0	0.8	1	23	559	583	559	583	0.95

Sequence Information

Coding Sequence: ATGACTGAAGCCCCAAACATTCAACAACGAAACAACGAAATACTTTCATGTATATTCAACGTAATTTTTGTTGCAGACACCGCCGCCCCATATGTGTTATACAAAGACGGCATGGACCAATCGCGGGGTCAATGGGGTACTCAAGACGCCTATCCTCCACCTCATCAAGGCACCTCCGGTGCCGGCAGTCCCCAACAGGCTTGCGGTCCAACAGTGCCTCTTGGTACCGAAGCCGACGCCGTATCACCTCGAGACCAAAGCTTACCATCACCCGCACCTTCTCCTTATCCCGCCACTCAAGCCGAACCCAGAGAGGACGAGATCCAACCGGAACCTCCAACGATGGACCTAGAACCGAGGCCCGCTTCGCAGTGTTTCCCTACCGATTTACAGCAGCAACAGCAGGCGTACCAACAGTATGCGAGAGCTCCCCCGCCGGCAGCGCCACCTCCCGTCCCACCCCACATGCTGGGAGCCGGCAGTTTTTCCGCGTTGCACTATCTCAAACAACCGGGGGTCATGTTGACCAGTCTCGGACCCGACGGCGGGAGTCAGTTGGACCAGTACGCTAGCAACATGCAGGACTTGCGCTCTGCGAGTTTGCCCGACGTCATCCAGCACCAGCAGGCGGGCCTGAAACAGACGAAGAGCGGTCTGGGAGGCGGCGAGTTGCGCCTGTTCAAATGTTTGACTTGCGGCAAAGATTTCAAGCAAAAATCCACGCTGCTGCAGCACGAACGCATCCATACCGACAGCCGACCGTACGGTTGTCCTGAGTGCGGCAAACGTTTCCGTCAACAGTCCCATCTGACCCAACATCTCCGGATCCACGCCAACGAGAAACCGTACGCGTGCGTTTACTGCGAGAGAACGTTCCGTCAAAGGGCCATCCTCAACCAACATCTGCGAATCCATTCCGGTGAGAAGCCCTATGAGTGCCCGGAGTGCGGGAAACACTTCCGCCAGAAGGCCATCCTCAACCAGCACGTCCGCACACACCAAGACGTAAGCCCGCATCTCGTGTTCAAGAACGGCATCAACCCCACGTTATGGCCTCAAGACGTGCCGTTTCCCCCCGACGAGGGCAAAGAGGAGGTGGCGTCGACTTACGGCGACGGCGATACCACCTCGCAAACGGACCGCGGTTGTTTCTCACCCAACGGCGTCAACGGCAGTCTCCAATATCCGGCATATTTCAAAGACGCCAAAGGCATGAATCATTCGGTGTTCAGTTCCAATCCGAATTTCGGCGCGTTGCAGTACCTCAAACAGCAGCAAGTCGGTAAAATTCTGCCCGATGTTATCCAACACGGAAGGTCTGCGGGAATGCCGTTGTACGTGCGATGTCCCATATGCCAGAAAGAGTTCAAACAGAAATCAACATTGCTACAGCACGGATGTATACATATCGAGTCGAGACCCTATCCGTGTCCAGAATGCGGAAAAAGGTTCCGTCAACAGAGCCATCTGACGCAACATTTGAGGATTCATACCAACGAAAAACCCTACGGTTGCGTTTATTGCGGAAGAAACTTCCGTCAAAGAACCATCCTCAACCAACATTTGAGGATACACACGGGGGAGAAACCGTACAAGTGCGGGCAGTGCGGAAAAGACTTTCGACAAAAAGCCATCCTGGATCAACACACGCGGACGCATCAAGGAGACCGGCCTTTCTGTTGTCCGATGCCCAATTGTCGGCGGAGGTTTGCGACGGAACCCGAAGTGAAGAAGCATATAGATAACCACATGAACCCGCATGCGGCAAAGACACGTCGAGACTCGACTGGTTCCGAAAGCAAATTGAGCAACGGAATGCTACCCCGGGGTTTAACCCCAACAACTGTGGTGAAGCCGGAACTGTATTTTCCGCAGTGTTACGCGCCCAGTTTCAATCCTCCGAGTAGCGTGGCGCAGTTCCAGGCCGCTAATCCAGAATTTAAACCGCCCAACGGTTTACCGGCCCAGTGA
Protein Sequence: MTEAPNIQQRNNEILSCIFNVIFVADTAAPYVLYKDGMDQSRGQWGTQDAYPPPHQGTSGAGSPQQACGPTVPLGTEADAVSPRDQSLPSPAPSPYPATQAEPREDEIQPEPPTMDLEPRPASQCFPTDLQQQQQAYQQYARAPPPAAPPPVPPHMLGAGSFSALHYLKQPGVMLTSLGPDGGSQLDQYASNMQDLRSASLPDVIQHQQAGLKQTKSGLGGGELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGINPTLWPQDVPFPPDEGKEEVASTYGDGDTTSQTDRGCFSPNGVNGSLQYPAYFKDAKGMNHSVFSSNPNFGALQYLKQQQVGKILPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKTRRDSTGSESKLSNGMLPRGLTPTTVVKPELYFPQCYAPSFNPPSSVAQFQAANPEFKPPNGLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330021;
90% Identity: iTF_01227590;
80% Identity: -