Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: B0310.2
Assembly: GCA_905333025.1
Location: HG995154.1:24111268-24115239[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.035 2.4 9.1 2.1 3 23 10 30 8 30 0.97

2 16 0.56 39 5.3 1.1 1 21 160 180 160 181 0.94

3 16 0.032 2.2 9.2 1.6 3 21 189 207 188 210 0.89

4 16 0.0086 0.6 11.0 1.5 3 23 216 236 215 236 0.97

5 16 0.0036 0.25 12.2 4.1 1 23 242 265 242 265 0.96

6 16 3e-06 0.00021 21.9 1.7 1 23 270 292 270 292 0.97

7 16 8e-05 0.0055 17.4 6.0 1 23 388 410 388 410 0.97

8 16 0.001 0.07 13.9 2.1 1 23 416 438 416 438 0.98

9 16 0.00011 0.0077 16.9 7.7 1 23 443 465 443 465 0.99

10 16 0.0022 0.15 12.8 0.4 3 23 473 494 472 494 0.95

11 16 0.0017 0.12 13.2 0.7 2 23 500 521 499 521 0.96

12 16 7.6e-05 0.0053 17.5 0.9 1 23 531 553 531 553 0.97

13 16 9.2e-05 0.0064 17.2 0.2 1 23 559 581 559 581 0.98

14 16 3.3e-06 0.00023 21.7 0.6 1 23 587 609 587 609 0.98

15 16 7.1e-06 0.0005 20.7 5.6 1 23 615 637 615 637 0.97

16 16 0.00014 0.0098 16.6 2.6 5 23 646 664 643 664 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.035	2.4	9.1	2.1	3	23	10	30	8	30	0.97
2	16	0.56	39	5.3	1.1	1	21	160	180	160	181	0.94
3	16	0.032	2.2	9.2	1.6	3	21	189	207	188	210	0.89
4	16	0.0086	0.6	11.0	1.5	3	23	216	236	215	236	0.97
5	16	0.0036	0.25	12.2	4.1	1	23	242	265	242	265	0.96
6	16	3e-06	0.00021	21.9	1.7	1	23	270	292	270	292	0.97
7	16	8e-05	0.0055	17.4	6.0	1	23	388	410	388	410	0.97
8	16	0.001	0.07	13.9	2.1	1	23	416	438	416	438	0.98
9	16	0.00011	0.0077	16.9	7.7	1	23	443	465	443	465	0.99
10	16	0.0022	0.15	12.8	0.4	3	23	473	494	472	494	0.95
11	16	0.0017	0.12	13.2	0.7	2	23	500	521	499	521	0.96
12	16	7.6e-05	0.0053	17.5	0.9	1	23	531	553	531	553	0.97
13	16	9.2e-05	0.0064	17.2	0.2	1	23	559	581	559	581	0.98
14	16	3.3e-06	0.00023	21.7	0.6	1	23	587	609	587	609	0.98
15	16	7.1e-06	0.0005	20.7	5.6	1	23	615	637	615	637	0.97
16	16	0.00014	0.0098	16.6	2.6	5	23	646	664	643	664	0.94

Sequence Information

Coding Sequence: ATGAAGCAATACGGCCCAACCTTCGGTTGTTGCAAATGTGGTGACAAATTCAAAACGATCAGCGAACTCTATTCGCACCTTGACACCCATCAAATAGAAGAACAACCAGAGGAAGTCGTAGAAGAAATAGTACTTGATTATGAAGACGAAGAAACTCCTACCAGCGAACTTCTTTATATTCTCGATGATTCGCAGTGCGTCAACGAAGTTGTAATAGAAGAAGACACTACTGTTATGGATATTAAAAAAGAGAAACCTTTAGATAACGTTACGATAGTGAGACTGGAACATGGTTATGTCATCCCTGACGCTATTGAAGAAGTCATTAATGGCAAACAAATACAGCCTTCAACTAGCAAAGTTTCGTTAACACCACGTCCTAGAGCATCGCAACCTAAACGTCGTCATGTCGTTCCTGATTTTTCTTCAACGAATTACGTTTTTATGGCCGCCAATAAAGAAGTAGATATAGCTCATTTTAAATGTTTGCGTTGCGAACAACTGTTTATCAACAAATTTGTTTTCTTCCGTCACATTGAAAAAGGTAAATGTTATATTAATAATTGCGACGTTTGTAGCGCTACTTTTACTAAAAACAGCGAGTTTTATCACCATTACGTTTTTGAACATACTGATAGGGCAATTTGTAATTTCTGTTTCCGTACTTTTATGTATGAGAAAAACGTTAAAGAACATATGTTACGACATTTGGACCAGTTCAGACATCGTTGCGATGAATGCAACAAAGGTTTTTATACTGTGAGAGAGTACAGAAACCATTATAAAAATCGTCATATGGGTATAAGACACAGTTGTACTATTTGTGGAAGAAGTTTTGCAGATGAATACTATTTCAGGCGCCATCTGGCGACTCATGAGCAAGCTTCTGTTGTGGCGCATGCCCTTGCCCTCTACTCGGATCCCATGTACTCGACGAATTACACCGACGAAACCAACAATCTTCACTTGCTGGTCGACCAGTTAAACGAGTCGGACGCGGACTTGTTGAATTTGTTGACAGCTGAAGACGATTGCACCGCCATTTTGAACAACATCGCCACTACAGAACAATTTGAACGTCTCATCAACAACGGATCGAGTTTCGTGGAGGAACTCATTGATGAAATCAAAGAAATCGACGACGGAAAAATCGAACAAACATTCAAATGTTTCCATTGCGAAAAAGGTTTTAAAACTAAAAAACTATTAAAAAAACATTTATTTATTCACACCGGAGTCAAGAAATTCTCTTGCGAAATTTGCAGGAAACTTTTCAAATATCGCTATGAAGTTAACGTTCATAAAAGGAGTCACAATAATCCGACTTTTCAATGTGATATTTGCTCGAAAATGTTTATGCATAAGTCGCATATGACGACGCATCGTCGTAAACATTTGGGGGAGTTTGTGGCGTTTTGTAAAGAATGCAATTTGGGTTTTGTTACGCAATTTTTGTATAAAGCCCATTTGAATTTGGTACATAAAAACAATCGCTTGATTTGCGACGTTTGTGGATGTCGTCTCAGCTCACTTAGCGCACTTAAAGAACATAAACTCACTCACGATTCGAATTATGGTAAAGAAAGGACGCACGTTTGTGAAATTTGTGGTAAAAGTTATTTGACGTTAAGAAATTTGAAAGGTCACATGAAAATTCATGCCAGAATTCGACCGTATGTTTGTAATATTTGTGGAAAATCTGTTAGTAGCAAGAAAATTTTGGAAACTCACGTCAAAATGCATACTGGTGTCAAAGATTTTATTTGTAAGATTTGCGATAAGAGGTTTGCCTCTAAGGAGTATTTGGATGTGCATGAAAGGACGCATACGGGAAATAAGCCGTTTTGTTGTGAAGTTTGCGGAAAACGTTTTACTCAAAAGACGTCCCTCACAGTGCATTTGAGACATCATACGGGACAACGGCCGTATAAGTGCGAGTGTGGCAAGGAATTCACTACTAAGAGTCACTTGATGACACATTATAAAGCGCATGATATTGGAGGGGTCGATATTGACTACATCTCACGCCCATTGGTATAA
Protein Sequence: MKQYGPTFGCCKCGDKFKTISELYSHLDTHQIEEQPEEVVEEIVLDYEDEETPTSELLYILDDSQCVNEVVIEEDTTVMDIKKEKPLDNVTIVRLEHGYVIPDAIEEVINGKQIQPSTSKVSLTPRPRASQPKRRHVVPDFSSTNYVFMAANKEVDIAHFKCLRCEQLFINKFVFFRHIEKGKCYINNCDVCSATFTKNSEFYHHYVFEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHSCTICGRSFADEYYFRRHLATHEQASVVAHALALYSDPMYSTNYTDETNNLHLLVDQLNESDADLLNLLTAEDDCTAILNNIATTEQFERLINNGSSFVEELIDEIKEIDDGKIEQTFKCFHCEKGFKTKKLLKKHLFIHTGVKKFSCEICRKLFKYRYEVNVHKRSHNNPTFQCDICSKMFMHKSHMTTHRRKHLGEFVAFCKECNLGFVTQFLYKAHLNLVHKNNRLICDVCGCRLSSLSALKEHKLTHDSNYGKERTHVCEICGKSYLTLRNLKGHMKIHARIRPYVCNICGKSVSSKKILETHVKMHTGVKDFICKICDKRFASKEYLDVHERTHTGNKPFCCEVCGKRFTQKTSLTVHLRHHTGQRPYKCECGKEFTTKSHLMTHYKAHDIGGVDIDYISRPLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -