Pser020944.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995154.1:24117158-24120705[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00043 0.03 15.1 5.1 2 23 31 52 30 52 0.96 2 17 8e-07 5.5e-05 23.7 4.4 1 23 58 80 58 80 0.98 3 17 0.00013 0.0088 16.8 1.6 1 23 86 108 86 108 0.99 4 17 0.0002 0.014 16.1 0.3 3 23 116 137 114 137 0.94 5 17 0.0002 0.014 16.1 1.1 1 23 142 164 142 164 0.97 6 17 0.19 13 6.8 5.6 1 23 174 197 174 197 0.85 7 17 7.6e-05 0.0053 17.4 0.3 1 23 204 226 204 226 0.97 8 17 1.9e-05 0.0013 19.3 0.2 2 23 233 254 232 254 0.96 9 17 7.1e-07 4.9e-05 23.9 4.5 1 23 260 282 260 282 0.98 10 17 6.4 4.4e+02 2.0 0.3 1 11 288 298 288 300 0.86 11 17 2.4e-05 0.0017 19.0 3.4 2 23 496 518 495 518 0.97 12 17 0.011 0.74 10.7 0.4 1 23 524 547 524 547 0.94 13 17 2 1.4e+02 3.6 0.5 1 23 558 581 558 581 0.93 14 17 0.016 1.1 10.1 1.5 3 23 589 609 588 609 0.98 15 17 5.8e-08 4.1e-06 27.3 0.4 1 23 615 637 615 637 0.98 16 17 0.0002 0.014 16.2 0.2 1 23 643 665 643 665 0.96 17 17 2e-05 0.0014 19.3 0.4 1 23 671 693 671 693 0.96
Sequence Information
- Coding Sequence
- ATGTGGTCGAAATTGTTGCACTTTAAAAGGTCGACAAAGCCACACTCGAAACTCAAAAGGAAGACGAAAAGGCATGACACCAACACGACTACTTGTCTTCATTGTTCTAAAGTTTTCGAAACTCATAAACAGCTACAAAAACACCTAATTTCGCACAGTCAAGACCGCCCTTTTACCTGCCACATCTGCGGGAAGAAATTTAAACGTAAATATGACATAACGATCCACCAGAGAAGTCACTCCAGTTCTTCCACGTATCAATGTGACATTTGCCAGAAAATTCTAAAATCGAAAGGATCTTACCTGACGCATCGCAGGAGACATTTGAAGGATTACGTGGTGATTTGCAAGAAATGCGGCCAAGGTTTCGTTACTAATCAGGAATATCAGAATCATATGGGTTCTAAACATGGACCTAGCGCTCACGTTTGTAAAATTTGTGGACGAGGTTGTTACGATAAAGCGGCATTGCAAAGTCATGTTGCGAGACATGTAACTGGTTACGAGGAGAATCGCAATTTTAAATGCGAACTGTGCAACAAAACTTTTCTTCAGGACAAATATTTGAAACATCACTTTTTCAGGATGCATAAAAATGGTGGACAGCAATTTATTTGCGATTTGTGCGGTAAAAAAGTGAATTCGAAAACGAGTTTACGTGATCACTTATTGGTGCATAAAGGACTAAAACCGCTTGAATGCAAGGAGTGTGGTAAGGGTTTTGCTTTAAGGTCCACATTAAAGGTGCATTCGAGGATACATACTGGAGATAAGCCGTATTGTTGTTCGGATTGCGGTAAGACGTTCACGCAAAGGACTTCTTTAACGATTCATCAAAGGTACCATAACGGGCAAAGGCCGTATGTTTGTGAAATTTGCCAAGTTGGATTTCCATTCCAACTACCGAAAGGAATAACTTTAAAAAAGGTGTCTACAACAATCCCTATCAAAACAGTGGAAATTCCTAGTCGAGTTCGAATAATATCAGCAAATGCTGGTGTTGACATGAAACAAGCCCGATACACTACTCCAACAGTTTTAGTGTCAAAGCCTCGATGCAATAACACAACGAAAATGAATGCTAAAAATGATAATCAAAATTCCGGAGGCATCAAGTTCTCCATAGAACCAAAAATGGTCCCTATTGATTCGAACTGGATGAGTCGGATAATCGTTCATCCGCAGAAGCCCCCCATAGAGAAAGACAAATTTCCCGAAAAGGAGCATACGGTCATGTTCAAAATTGGTCCTGAAGTTGTTTGGATCAACCCTAATCCAATCGAGAAAAAACGTTGGCCGAAAAAACAAGTCGTAAGGAAGTCACCTCCAGACCACGACTACTGCGATAACCCGAAAGCTTCAGAAGCAAGTTTCGTTCCGATCAAGAGTACGTCTTTCTTGTGCCAGGATTGTAAGGAAAAGCATGAAACAATTGAGGATTTGTATAATCATAACTGTGTACCTTTTCCGAAGAAACCTCTAAAAACTTGTCCGATTTGCAAAAAAACTTTCCGTCAACCCCATCAAGTCAGATTACATATAAAGAGGAAGCACGGGGAAAAAACTAGGTATCCTTGCGAAAAGTGCAGCAGAGATTTTCCTACTACGTCACTAAAAACTGCTCATTTATCACAAGACCACACTGAACATTTTGATGCGGTTGATGGAGGTTTCGCGTGTAAATTATGCGGGAATGTAAAAAAAGACAAGAGGAGTGTGTTGAGTCACGTGAATTCACAACATCTTAAAATCGCCGGTTTATTATGTGATATTTGCGGCAAGTGTTACTTAGAGGAAAGAACTTTGAAAGTGCATAGGATGACACACGATGACACCATATCGTTTGAGTGCGGTATTTGCGGAAAAGGTTTCAGGAGGAAAGAGGCTTTGAGGAGGCATATAAAAAATCATGATGACACCATTCAATTTGCTTGTGGAGTATGTGGAAAAATTTTCAGAAAAAAATTTTTGCTGGATGAGCATCTAAAAGGACATGAAGGAAATTACCAGTATTTATGTCAAGTGTGCGATAAGGAGTTTCCATCGGAGTATGCTTTAAATCAGCATACCAAGACCCATAATTTGTTGGAATATATTGTGGAATACCAGTAG
- Protein Sequence
- MWSKLLHFKRSTKPHSKLKRKTKRHDTNTTTCLHCSKVFETHKQLQKHLISHSQDRPFTCHICGKKFKRKYDITIHQRSHSSSSTYQCDICQKILKSKGSYLTHRRRHLKDYVVICKKCGQGFVTNQEYQNHMGSKHGPSAHVCKICGRGCYDKAALQSHVARHVTGYEENRNFKCELCNKTFLQDKYLKHHFFRMHKNGGQQFICDLCGKKVNSKTSLRDHLLVHKGLKPLECKECGKGFALRSTLKVHSRIHTGDKPYCCSDCGKTFTQRTSLTIHQRYHNGQRPYVCEICQVGFPFQLPKGITLKKVSTTIPIKTVEIPSRVRIISANAGVDMKQARYTTPTVLVSKPRCNNTTKMNAKNDNQNSGGIKFSIEPKMVPIDSNWMSRIIVHPQKPPIEKDKFPEKEHTVMFKIGPEVVWINPNPIEKKRWPKKQVVRKSPPDHDYCDNPKASEASFVPIKSTSFLCQDCKEKHETIEDLYNHNCVPFPKKPLKTCPICKKTFRQPHQVRLHIKRKHGEKTRYPCEKCSRDFPTTSLKTAHLSQDHTEHFDAVDGGFACKLCGNVKKDKRSVLSHVNSQHLKIAGLLCDICGKCYLEERTLKVHRMTHDDTISFECGICGKGFRRKEALRRHIKNHDDTIQFACGVCGKIFRKKFLLDEHLKGHEGNYQYLCQVCDKEFPSEYALNQHTKTHNLLEYIVEYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -