Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: -
Assembly: GCA_905333025.1
Location: HG995158.1:1372510-1376289[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0019 0.13 13.1 0.1 1 23 176 198 176 198 0.97

2 12 0.0058 0.4 11.5 1.6 1 23 204 226 204 226 0.96

3 12 2e-05 0.0014 19.3 3.1 1 23 232 254 232 254 0.98

4 12 0.00016 0.011 16.4 1.4 3 23 268 288 266 288 0.95

5 12 0.00012 0.0086 16.8 0.1 3 23 296 316 294 316 0.96

6 12 9.1e-07 6.3e-05 23.5 1.9 1 23 322 344 322 344 0.98

7 12 3e-06 0.00021 21.9 0.1 1 23 350 372 350 372 0.96

8 12 2.4e-06 0.00017 22.2 0.1 1 23 378 400 378 400 0.98

9 12 5.4e-07 3.8e-05 24.2 1.1 1 23 406 428 406 428 0.98

10 12 7.3e-06 0.00051 20.7 3.2 1 23 434 456 434 456 0.97

11 12 3.2e-07 2.2e-05 24.9 0.4 1 23 462 484 462 484 0.97

12 12 3.2e-06 0.00022 21.8 3.0 1 23 490 512 490 512 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0019	0.13	13.1	0.1	1	23	176	198	176	198	0.97
2	12	0.0058	0.4	11.5	1.6	1	23	204	226	204	226	0.96
3	12	2e-05	0.0014	19.3	3.1	1	23	232	254	232	254	0.98
4	12	0.00016	0.011	16.4	1.4	3	23	268	288	266	288	0.95
5	12	0.00012	0.0086	16.8	0.1	3	23	296	316	294	316	0.96
6	12	9.1e-07	6.3e-05	23.5	1.9	1	23	322	344	322	344	0.98
7	12	3e-06	0.00021	21.9	0.1	1	23	350	372	350	372	0.96
8	12	2.4e-06	0.00017	22.2	0.1	1	23	378	400	378	400	0.98
9	12	5.4e-07	3.8e-05	24.2	1.1	1	23	406	428	406	428	0.98
10	12	7.3e-06	0.00051	20.7	3.2	1	23	434	456	434	456	0.97
11	12	3.2e-07	2.2e-05	24.9	0.4	1	23	462	484	462	484	0.97
12	12	3.2e-06	0.00022	21.8	3.0	1	23	490	512	490	512	0.97

Sequence Information

Coding Sequence: ATGGATATGAGTGTTTATTTAACGGCACCTTTACAACTGGACAAGATATGTAGGGCATGTCTCACCGAAAAAGGCGACATGAGACCTTTGTTCGGGGCTTGTCTCGACGAAATGCTCCTCTCATTTGCTTCTATGCAGGTGCAAGAGGGTGATGGTCTGCCCAATCTGATGTGCGTTCAGTGCGTTTTACAATGTAGCAGAGCGTACACGTTCAAACAGCAATGTGAGAAATCGGACAACATTTTGAGACAGTATGTGAGTCCAGAATTCCAGCAACAACTGGCAGAAACTTTAAGTGAACAACAAGCTAAGGATGAACTCCAAGAACAGTTGCAATTTCCTGATAATATTGCCAGTGTTGTTATTGAAGAAGGAATAACGGCAGAATTTGTAACTTACAGCGAAGCTGACGGCACTGTAGTTGAGGTCAAACAAGATTTGTATACAATTGAAGCACCTACTGAAGTTGGCACAATTGAAGTTATTAAATGTGACGAAGATCCGTTAATTCAACATAAACTCAAGTATCCTTGTGTAAAATGCGAGGATTCATTTTCGTTAAAAGTCGATTTGAAGGTACACATGATGGCGCATCCGAAGGATCTCGACCATATATGCCACGTTTGTAGTAAAGGTTTTCCTGAAGCTCGTATTCTTAAACGTCATTTAAAAATACATTTGGATAAGAAACCCCATCAATGCGATCAATGCGACATGTCTTTTGCGGAAAGCTCCAATTTGAGCAAACACAAAAAGAAACATACAGGGGAATTGAGAAATATTATTGGAAAACCTCATTTATGTTCGGTTTGCGGACGCGCGTTCAAATGGGCTTCTAGTTTATCCAAACACATGAAATACCATACGGGACATAAATTGTTAGCTTGCGATTTCTGCGGCAAACAATATGTCGAAGCCAGAAGTTTGCGAATTCATATTAGGTCTCATACAGGGGAACGGCCGTACGTTTGCGAAGTTTGCCAAAAGACGTTCACGCAAGTTTGCAACTTGGAGAAGCATCTGCGCGTACACACGGGCGAAAAACCGTTTTTGTGCCCCATTTGCGGAAAAGGGTTTACCCAGTCGGGTTACGTTGGAATTCACATGAGAACTCACACGGGAGCTCGTCCTTACGTGTGTCAAACTTGCGGCAAAGCGTTCGCCGGTTCGAACACTCTAACTATCCACCAACGGATACATACCGGCGAAAAGCCTTACCCTTGCACTATGTGCGGAAAGGCTTTCAGTCGTCACGAAACCTTAATCATTCATACCCGTTCTCACACTGGAATTAAACCTCATATTTGTTCCGTTTGTAAAAAAGGGTTTACCTCATCGGGACATCTGTCAGGTCATATGAGAACGCATACCGGAGAAAAACCGCATGTTTGTAACATATGTGGAAAGAAGTTTGCAGGTTCGAGTAGTTTGAAGGTGCATATTCGCGGCCATTCGGGGGAGAAACCTTTTATTTGTAAATTGTGCGGGAAAGGGTTTACGCAATCGAGTTTGTTTCAACATCATTTAACTACTCATGTTCCAATCGATGATAAAGATCTAGTGACTAAAGTGGAAACGATCCAAGTTGGTGATTTAATAACAACTGAAGATAATGTCCATACGCTACAAGTGCAAACTGTTACTTCAATGTAG
Protein Sequence: MDMSVYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLLSFASMQVQEGDGLPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYVSPEFQQQLAETLSEQQAKDELQEQLQFPDNIASVVIEEGITAEFVTYSEADGTVVEVKQDLYTIEAPTEVGTIEVIKCDEDPLIQHKLKYPCVKCEDSFSLKVDLKVHMMAHPKDLDHICHVCSKGFPEARILKRHLKIHLDKKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIIGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLACDFCGKQYVEARSLRIHIRSHTGERPYVCEVCQKTFTQVCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSNTLTIHQRIHTGEKPYPCTMCGKAFSRHETLIIHTRSHTGIKPHICSVCKKGFTSSGHLSGHMRTHTGEKPHVCNICGKKFAGSSSLKVHIRGHSGEKPFICKLCGKGFTQSSLFQHHLTTHVPIDDKDLVTKVETIQVGDLITTEDNVHTLQVQTVTSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01278372;
90% Identity: iTF_01329995;
80% Identity: -