Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: su(Hw)
Assembly: GCA_905333025.1
Location: HG995153.1:6142132-6144836[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.7e-05 0.0026 18.4 0.3 2 23 163 185 162 185 0.95

2 13 6.1e-05 0.0042 17.8 0.3 1 23 216 239 216 239 0.96

3 13 1.7e-06 0.00012 22.7 0.7 1 23 244 266 244 266 0.98

4 13 1.6e-05 0.0011 19.6 0.6 2 20 273 291 272 293 0.95

5 13 1.1e-06 7.6e-05 23.3 1.3 1 23 304 326 304 326 0.98

6 13 8.6e-06 0.0006 20.4 0.5 1 23 336 358 336 358 0.99

7 13 4.6e-06 0.00032 21.3 0.3 1 23 364 386 364 386 0.98

8 13 1.8e-05 0.0013 19.4 2.3 1 23 392 414 392 414 0.98

9 13 0.00075 0.052 14.3 8.7 1 23 420 442 420 442 0.94

10 13 2.3e-05 0.0016 19.1 3.2 1 23 448 471 448 471 0.97

11 13 0.00082 0.057 14.2 2.7 2 19 478 495 477 499 0.92

12 13 5.3e-07 3.7e-05 24.3 0.6 1 23 505 527 505 527 0.98

13 13 1.4e-05 0.00098 19.8 3.7 2 23 534 556 533 556 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.7e-05	0.0026	18.4	0.3	2	23	163	185	162	185	0.95
2	13	6.1e-05	0.0042	17.8	0.3	1	23	216	239	216	239	0.96
3	13	1.7e-06	0.00012	22.7	0.7	1	23	244	266	244	266	0.98
4	13	1.6e-05	0.0011	19.6	0.6	2	20	273	291	272	293	0.95
5	13	1.1e-06	7.6e-05	23.3	1.3	1	23	304	326	304	326	0.98
6	13	8.6e-06	0.0006	20.4	0.5	1	23	336	358	336	358	0.99
7	13	4.6e-06	0.00032	21.3	0.3	1	23	364	386	364	386	0.98
8	13	1.8e-05	0.0013	19.4	2.3	1	23	392	414	392	414	0.98
9	13	0.00075	0.052	14.3	8.7	1	23	420	442	420	442	0.94
10	13	2.3e-05	0.0016	19.1	3.2	1	23	448	471	448	471	0.97
11	13	0.00082	0.057	14.2	2.7	2	19	478	495	477	499	0.92
12	13	5.3e-07	3.7e-05	24.3	0.6	1	23	505	527	505	527	0.98
13	13	1.4e-05	0.00098	19.8	3.7	2	23	534	556	533	556	0.94

Sequence Information

Coding Sequence: ATGGAGGACCCAATGGTAATCAAGGACGAGCCGGCTGCCAAAAAGGAAGTTGAAGCACGAACTGTTGTCCTACAAAACATCCCGATGGAAGGCGGGGACATTCCCGTTATTTTCAACGAATACATGGAAAATAATTCCGATGGAAACTTAACTATCAATAGCGTTCAAGAAGAAGACGTCATTCACACCTACATTATCGAACAAACTGAATACAACACTATTCAATATGAAGAAGGCGCCGAAGAAGAAACCGAAAAAGACGAAAAACTCCCCGCCGAAACCACCATCGAGACCGAAATTGACAACCCAATGGAATATGAAGTAAGCGAAGTGATTGAAGCGGCCGAATCTGACGGTGAAGAAGTCGAAGATGAAGCAGAATATGTTGATCCCAAAGAGTTGGAATCGGTTGATGATCCGGATCCCGAAGAATTTGAAGCTCCTGACACTGAAGAAGAGGAGGAAGAAGAAGAAGAAGAGTGTCTCGAATGCGATTTGTGTCAACGTAAATTCAAAACTGCTGCAGGATTAAAACGACACATCACCGTCAATCATGCTGAAATTAAAGATCAAAAAGATCCTCTCACGTTTCAATTGTGCGCATGTTGCGGAGAACCCCTCGATTCCGCTCATACGATCGGCGATTTTAAATGTGGACAATGCGACAAGTTGTTCGTGCAACAAATTAGTCTCAATCGTCATGTCAGTATTGAACATAGCGAAGGTACTTTTCAATGTGTGGAGTGCAAAAAGGAATTTAAACAAAAAGACCTATTGGTTGACCACATGAAGATTCATCCTTTAACCAAAACAATTAAGTGTCCGGATTGCAGCCGGGAATTTACTAGAAAGTACCATTTGGATAGGCACATCGACCAAACCGGGTGCAATGGAGCCCCCAGAAAATTATTTGTGTGCAAGGTTTGCAACAAAGTTTTTCACCGCAAGGACAACCTAGCCGACCATTTACGAGCCCATGCAGGTCAAGGTAAAAGAAAAAAGATTTTTACTTGCGAATATTGCAAAAAAGAATTCCAAGGTTCGGCCTTACTCAACATCCACATTAGAACCCACACAGGGGAAAAACCGTATCCATGCGACTTGTGTCCGAAACGGTTTCCCTCTAGCGGCGCTATGAAAAAACATAGAAGGATGCACACAGGTGAAAGACCGTACGCTTGTAAAGAGTGTCACAACAGGTTCGCAGCCAAAGAAACCCTCAACAGACACATGCGCACCCACACCGGTGAAAAGCCTCATTGTTGTCAGTTTTGCGGCAAATGTTTCATCCAAGCATCACAATTGAGGGCCCACATTTTCCATCATACCGGCGAGAACGCGTACACTTGCCCCCATTGTAACCGAGCTTTCAACCGCAAATTGAGACTAACCACCCACATTCGATATTTGCATGAAGGGGCAGTACCTTTAATATGTTCCGAATGCAACAAAACTTTTTTCAGAAAAGAAGACCTCGCAAGACACTTTCTGTGCCACACCGGCGAGCGACCTTTCGAGTGCGATGTTTGTCAGAAAACTTTCGCGGTTAAGTCTTCTTTAAAAATTCATCAGATGACTCATCGTAAGGAACCTCCGTGCAGCTGTGAAACTTGTGGACGAGCTTTTATACGTCAGGACTGTTTGATGCGTCATATGCGAGCACGTCATCGTGACGTTCTCGAAGATATTATGGCGAGTGCTGAAAAGAAACGATTACAACAACAACTTCTTAACGCCGCCACTGAGGCTGTTGCTAAAAATCAAGGAAGTCTCACCGAAAATATGATTTGGAACGAATTAACTTTGACTGAATCTATTAAAGAATTATTAACGATTCTTGTGGATGAGGCGTGTTTGAACGATTTCGGGTTTCCCGATGCGCCAGTTGATAAAATTTTAGATTCTGTTATAAAGCGTTGTGGACATAAACCGGCGTCTGAAGAAGATTTCGATTATATCGGGAGGATGAGGGAGAATGCTAAATTGTTGTTTACGGTGGTTATCGATGATGAAGCTGTTAAGTCGTTGTTGAATAACCAGACTGTTGATGAAGTGATATTGCATGTTTTGAGGCTAGCTAAAGCCGAGAGTACTTAG
Protein Sequence: MEDPMVIKDEPAAKKEVEARTVVLQNIPMEGGDIPVIFNEYMENNSDGNLTINSVQEEDVIHTYIIEQTEYNTIQYEEGAEEETEKDEKLPAETTIETEIDNPMEYEVSEVIEAAESDGEEVEDEAEYVDPKELESVDDPDPEEFEAPDTEEEEEEEEEECLECDLCQRKFKTAAGLKRHITVNHAEIKDQKDPLTFQLCACCGEPLDSAHTIGDFKCGQCDKLFVQQISLNRHVSIEHSEGTFQCVECKKEFKQKDLLVDHMKIHPLTKTIKCPDCSREFTRKYHLDRHIDQTGCNGAPRKLFVCKVCNKVFHRKDNLADHLRAHAGQGKRKKIFTCEYCKKEFQGSALLNIHIRTHTGEKPYPCDLCPKRFPSSGAMKKHRRMHTGERPYACKECHNRFAAKETLNRHMRTHTGEKPHCCQFCGKCFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIRYLHEGAVPLICSECNKTFFRKEDLARHFLCHTGERPFECDVCQKTFAVKSSLKIHQMTHRKEPPCSCETCGRAFIRQDCLMRHMRARHRDVLEDIMASAEKKRLQQQLLNAATEAVAKNQGSLTENMIWNELTLTESIKELLTILVDEACLNDFGFPDAPVDKILDSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLRLAKAEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01329991;
90% Identity: iTF_01329991;
80% Identity: -