Pser015919.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995156.1:14386865-14388379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.74 52 4.9 0.3 6 22 53 69 52 72 0.90 2 15 0.075 5.2 8.0 1.3 6 22 88 104 86 107 0.90 3 15 1.7e-05 0.0012 19.5 8.4 1 23 111 133 111 133 0.98 4 15 7.3e-08 5.1e-06 26.9 1.1 1 23 139 161 139 161 0.98 5 15 5.2e-05 0.0036 18.0 0.2 1 23 167 189 167 189 0.97 6 15 2.1e-05 0.0014 19.2 3.4 2 23 198 219 197 219 0.96 7 15 5.8e-05 0.0041 17.8 0.7 3 23 233 253 231 253 0.95 8 15 4.3e-05 0.003 18.2 1.0 1 23 258 280 258 280 0.98 9 15 5.9e-07 4.1e-05 24.1 0.8 1 23 286 308 286 308 0.97 10 15 3.6e-06 0.00025 21.6 4.5 1 23 314 336 314 336 0.97 11 15 1.7e-06 0.00012 22.6 2.2 1 23 342 364 342 364 0.99 12 15 2.8e-05 0.002 18.8 0.1 3 23 372 392 370 392 0.98 13 15 6.7e-06 0.00047 20.8 3.5 1 23 404 426 404 426 0.99 14 15 1.8e-05 0.0012 19.5 0.8 1 23 438 460 438 460 0.98 15 15 4.6e-07 3.2e-05 24.4 1.4 1 23 472 494 472 494 0.98
Sequence Information
- Coding Sequence
- ATGAATACTAGGAAGGTGTCCAGTCGATTGTTAGATGGAGAGAATAATCTTTATCATAAAGATGAAACACCACAAGCCTCTACTATTGAGGATAGTAAATTATCCACATATGATGAAAATGTTGAAAATAATGTTGTGAAAACGTACATTTGTGCTTGTAACGCTTCGTTTACAAACTATGTGAAGTACATGAAGCATCGTAAGGAATTGAACCATTGCTACCGCCCAAAAACAATGAAACCTAGAACTAAACAATGTAGTTGTGGTTTAACTTTCACTGATCAAGCAAAATTTTTAAAACATCGAAAAGAATCGAAACACTCACGGCAACACTCTTGCAATTATTGCAGTAGAAAGTTTAACAGTAATCAACATTTAAAAAGACACTTGCGCACTCATACAAAAGAAAAGCCTTATCCTTGCCAGATATGTTCGAAACAATTTCCAACCAACTACAATTTACAAAGACACATGATGCGACATACTGGTGAAAGACCTCATGTTTGCGAATTCTGCGGCAAAGGCTTTATAGAAATCAGCGGATTGAAAGCACATTTACTAACTCATACTGATACCGCCCCTGTACCTCTAATTTGTAGTTTATGTGGACAACATTTTCGCACACAATCTTCTTTTACTCAGCATCTAAAACGTCATGAAACTCTTACAAATCCGGGGTTGTCTAGAAATCATTTATGTGATGCTTGCGGAAAAAGTTTTGATTCGAAAGCGTATTTGTTGCAACATTTGATTACCCATGGTGAGAAAAAATTTTCTTGTGATAAATGCGAAAAACGTTTCTACGCTAGAGGAGCTCTAGAATCTCATTATAGAACTCATTCAGGGGAGAAACCGTACGTTTGCAATTATTGTCAAAAATCATTTACTCAACCGGGTTCTTTAAAAATTCACACGTATATTCATACTGGTGAAAAACCGTTTAGTTGTAAAATTTGTTCGAAAAGTTTCACCCAATCGACTCATTTAAAATATCATATGGTATCGCATACCGGAGAAAGAGCTTATACTTGTCCTTATTGCGAAATCGCTTTTTCTTTTAAATGTAATCTCACTATTCACATTAGAAAACATACGGGGGAGAATCCGTATGGATGTGAGGTTTGCGGGGAAGCATTTCCAGCTTCTGATAAATTGAAAAAGCATCAACGAATTCACCAGAATTCTAAAAGTGATATTGATGAAAAACCGTATGTTTGTGAAGTTTGTTTTAAGGGGTTTCGAAATTCGAATCACTTAAATAGTCATAAAAGAACTCATGAAAAAGTGAATTGTGAAATGGGGGAAAAACCTTACAAGTGTGAAATTTGTTTAAAGGGATTCAAGGTGCTTAGGAATTTGAGGCGACACGAGAAGATTCACGAAGATGCGAAGAATAATGTTGATATGAAGATGTATAAGTGCAGTGTGTGTTTGAAAGGGTTTAGGACTTCAAGTAATTTGAAGAGACATGCAAAAGTACACGAGAAAAAGGACAATGCAAATATTTCTATGTAA
- Protein Sequence
- MNTRKVSSRLLDGENNLYHKDETPQASTIEDSKLSTYDENVENNVVKTYICACNASFTNYVKYMKHRKELNHCYRPKTMKPRTKQCSCGLTFTDQAKFLKHRKESKHSRQHSCNYCSRKFNSNQHLKRHLRTHTKEKPYPCQICSKQFPTNYNLQRHMMRHTGERPHVCEFCGKGFIEISGLKAHLLTHTDTAPVPLICSLCGQHFRTQSSFTQHLKRHETLTNPGLSRNHLCDACGKSFDSKAYLLQHLITHGEKKFSCDKCEKRFYARGALESHYRTHSGEKPYVCNYCQKSFTQPGSLKIHTYIHTGEKPFSCKICSKSFTQSTHLKYHMVSHTGERAYTCPYCEIAFSFKCNLTIHIRKHTGENPYGCEVCGEAFPASDKLKKHQRIHQNSKSDIDEKPYVCEVCFKGFRNSNHLNSHKRTHEKVNCEMGEKPYKCEICLKGFKVLRNLRRHEKIHEDAKNNVDMKMYKCSVCLKGFRTSSNLKRHAKVHEKKDNANISM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -