Pser011688.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrochroa serraticornis
Gene Symbol
-
Assembly
GCA_905333025.1
Location
HG995155.1:6738568-6747464[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.067 4.7 8.2 1.1 1 23 310 332 310 332 0.89
2 28 0.0023 0.16 12.8 1.9 2 23 339 361 338 361 0.93
3 28 1.3 88 4.2 0.7 1 19 368 386 368 390 0.77
4 28 0.0055 0.38 11.6 2.3 1 23 396 418 396 418 0.98
5 28 0.0057 0.4 11.5 2.2 1 23 424 446 424 446 0.98
6 28 5.6e-07 3.9e-05 24.2 5.6 1 23 452 475 452 475 0.98
7 28 1.9e-05 0.0013 19.3 2.7 2 23 511 532 511 532 0.97
8 28 0.0012 0.085 13.7 7.1 3 23 540 560 539 560 0.97
9 28 2e-09 1.4e-07 31.9 1.6 1 23 566 588 566 588 0.99
10 28 0.0011 0.074 13.9 4.1 1 23 594 616 594 616 0.99
11 28 8.7e-05 0.0061 17.3 2.0 1 23 622 644 622 644 0.98
12 28 0.015 1.1 10.2 1.4 1 23 650 672 650 672 0.97
13 28 1.7e-07 1.2e-05 25.8 0.9 1 23 678 701 678 701 0.98
14 28 6.1e-06 0.00043 20.9 0.2 1 23 717 739 717 739 0.99
15 28 0.0052 0.36 11.7 0.1 1 23 745 767 745 767 0.98
16 28 9.3e-07 6.5e-05 23.5 5.2 1 23 773 795 773 795 0.98
17 28 8.1e-05 0.0057 17.4 3.7 1 23 801 823 801 823 0.97
18 28 2.6e-07 1.8e-05 25.2 0.8 1 23 842 864 842 864 0.99
19 28 4.7e-06 0.00033 21.3 4.5 1 23 870 892 870 892 0.98
20 28 4.3e-06 0.0003 21.4 5.4 1 23 898 920 898 920 0.98
21 28 8.8e-05 0.0062 17.3 3.0 1 23 938 960 938 960 0.98
22 28 0.00024 0.017 15.9 3.1 1 23 966 988 966 988 0.99
23 28 1.2e-07 8.6e-06 26.2 5.2 1 23 994 1016 994 1016 0.98
24 28 0.063 4.4 8.3 5.5 3 23 1026 1046 1024 1046 0.95
25 28 0.0012 0.086 13.7 2.8 1 23 1052 1074 1052 1074 0.99
26 28 2.9e-07 2e-05 25.1 2.1 1 23 1080 1102 1080 1102 0.98
27 28 1.7e-05 0.0012 19.5 4.5 1 23 1108 1130 1108 1130 0.98
28 28 1.8e-07 1.3e-05 25.7 5.9 1 23 1136 1158 1136 1158 0.98

Sequence Information

Coding Sequence
ATGGATGTACGAAATTTGATAGTCTGTGTTCTGGTTTACCTCATTCGTCCGAGTCAAAACAAGGGAATAAAAGGAGAAAAGAAACAGGACCGGACGACGGGAGACTCTCTTCCTCTCAATGTGTATATAAACAGGTTATTCGTGGCGCGCATGCGCTCTGATAACATCACAGCAGCGATAGGGCCTCAATTCAACATCTTGTCTCTTTTAGACTATGTCGAATTAAGTTATATAAAATTTCTCGAATTTTACATGGACATGAACGAATATCTTACAAAATACAGCGCTACTATCGATGAAAATTTAATTGCCAAATTCGAATTGGCGAATGATTCGTTGGTGGTGTTTTTCGAAGTTTTCGTTGATTTGAAAAACTTGGAAAATTTGACGGAAAACGATATCAAAATCGAGCAAAAAATTGGGGAAATTAAACAAAACGATGTTAAAATGTTGGCGATGAATTGCCCGAAAAACAGCGATTTCATCCACAGTTACATCAATAAAATAGAAGAGTATTTGGTGAAGAGAAAAAATTCTGACGAAGTCAATTTGAAACTGGAAGTAATAGATGAACAAATTGTAGATTTACCAAATAATGATGGTGATCCCGTCGAAATCGCGAAGGACGAATTTTTGGTACATCACTTTGCAAGTGGTGAGATTCATCAAATTGATTATGAAGAACATAGTCTTATAGAAACAAGGAACACAAATGGTGTTTGTGTCAGCAACCTGAAGCAAGAACGGACAAAACTAATTTCGAATTGGGAAAATATGAATGAGGAAAGTTGGGGACATGACAGAATGTTTGTTCAACGCTGGAACCAATTTGGACAAAGGTTTAAAAAATCTTCAGATTATGGCAAAAATATTAAGTTCCAAAATTCACTTATTAGGAACCAGAAAATCGATCAACTCGTCACCCCTTATCTGTGTTTGACTTGCGAGAAAGGCTTTAAACAACTGATACAATTAAAACTTCACAATTTTAATCATCTGAAAGACAAACGCTTGATATGTTATGTTTGTAATTTGAAATTTGCAGACAAAAAACATTTACTTAGGCACTTTAGGGCACGCCACGTGATTAACCCGAAAGCGTTTCCATGTAATTTTTGTGGAAAACCCTTAAAAAATTTACGTATAGTTCGAAGACATGACAAGAAACATCAAGACAAAAACTTTTACAAATGTATCTATTGTGATAAGCATTTTGTTGATGATCAAAAGTTTGCAAGACATATAAAGATTCACACTAGCTGGAAGCGTCATCAATGCCCCATTTGTGCCATGAGATTCCTCCGTAAACCTCATATGGTGGACCATATGAGAACTCATCTGGGCGTTAAACCGTATGAATGTCGCCATTGCAGCAAAAAATTTACCCAAAAATCAAACCTTAGACGCCATCTAAGGTCATTACACAGTGACTCGAAATCACCTGAAAGAAGGTCTTTGGATAATGATGTCAAAGTTGAAACACCTAATTTGATGTTTGCAATAAAAGAGCTACCAAATGATAGTTCCAACGAGTGTCATCTCTGCGGTAAGAGGTTCACTGCCAAGAAAAGTCTTAAAACACACATGCTGATTCACACAGGTGAGAAACCAGAGCACTGTAATCATTGTGGAATGCGATTTTTGCAAAAGAGCCATTTAACCGACCATATGAGGATCCACACTGGAATAAAGCCATATGAATGTTCGGATTGTGATAAGAAATTTACGCAGAAATCGAATCTTAACCGCCACATAAGAATACATACTGGACAACAACCTTTCCAGTGTCCTAATTGTTGTAAAAAGTTCTCTTTAAAACAAACTCTCCAGCTGCATATGAGGATACATACAGGAGAGGAACCCTACGAATGTAAGTCTTGCAATGCAAAATTTGTTCAAAAACAAAGCTTCCAGAGACATATTAGACTTCACTTGGGCGGCAAACTCCACGAATGCCCTTACTGCAATATGAAGTTTCTTCAAAAAATTCTGTTCAACGAACATCTTCAGGTTCATATGGGAGTCAAAAAGTTCGAATGCGGCGATTGCGGCAAAAAATTCACCGTAAAATCGAACCTTTACCGTCATGCAAGAACCATGCATAAAGGTAAAAAAACAAATGAAAATCAAGAATCGAACCCAGCTCCCTTTCAATGTCCCGACTGTGGAAAGAAATTTATTGCAGAGAGAAATTTTGACGTTCATATGATGACCCATACCGGCGAAAACCCATACGAATGCCCCGATTGCGGCATGGGTTTCCTTCGCAGAGTGCGTTACGAGGAACACATAAAAATCCACGTTGGAGTTAAACCATACAAATGTCGCGATTGCGATAAAAAGTTTACACACAAATCGAACCTTGCACGTCACACCAAACTTCACAGTAACAATAAATTGCACCAATGTCACGTTTGCGGCCAGAAATTTATTCAAAAACAGAACCTCGCACTTCATTTGACGAAACACTCGGCTGTTTCTGAATGTGGTGATACAAGTAATCTTAATATGGAAGAGCAACCATATAAGTGTCCCGATTGCGGCAAGAGTTTGTCCACAAAAAAAAGTTTGCAACTTCATATTACAACGCATACTGGAGAAAAACCGCATCAATGCTCTGTTTGCAGTAAAAAATTCAGTCGAAAATATTATTTGAACGATCATATGAAAATTCATATCGGTTATAAACCTCACAAATGCTCCAAGTGCGACAAGAGATTTATTCAAACATCTAATTTTAGACGGCATTTAAGAATACACGAGAAGAAGAAAACAATTTCAAACGATGCCACGCAACCTCCTGGAACTCCACATCAATGTTCTCTTTGCACCAAGAAATTTGTTATTAAAAGAAACCTCACTATTCACATGAAGATTCATACCGGTCAAGAACCCTACAAATGTCTAGATTGCGGCATGAACTTTCTAAGGAAAAGCCATTACACCGATCATATGAAAATTCATGCAGGCGTAAAACCTTATGAGTGTCGACATTGCGGCAAAAGGTTCACTCAAAAATCCAACTTGACCCGCCATACAAGATTACATACCAATCCAAATTATAAGCGCCATCTATGCCACAGTTGTGGTAAAAGGTTTAGTGAGAAACAATATCTTGATTTTCACATGAGGATGCACACCGGAGAAGAACTGTACAAATGTTTTCAGTGCCGAAGGAAATTTTCTGACAAAAATAGACTTGATGTTCACATGTTGAGTCATACTGGTGAAGAGTTGCATAAGTGTCCGATATGCGACAAGAGTTTAACTACAAAGAAAAGTCTACAGATTCATATAAGAACGCATACAGGAGAGAAACCGCATCAGTGTAGTGTTTGTCGGAAAAATTTCAACCGAAAGGGTTATTTGAAATACCATATGAGAGTCCATAGCGGGTTAAAACCACATCAGTGTTCGCATTGCGGAAAGAGATTCGCTCAAAGGTCAAATTTTATGCGTCACATGAGGATCCATATAAATGAAGAACCACCTTAA
Protein Sequence
MDVRNLIVCVLVYLIRPSQNKGIKGEKKQDRTTGDSLPLNVYINRLFVARMRSDNITAAIGPQFNILSLLDYVELSYIKFLEFYMDMNEYLTKYSATIDENLIAKFELANDSLVVFFEVFVDLKNLENLTENDIKIEQKIGEIKQNDVKMLAMNCPKNSDFIHSYINKIEEYLVKRKNSDEVNLKLEVIDEQIVDLPNNDGDPVEIAKDEFLVHHFASGEIHQIDYEEHSLIETRNTNGVCVSNLKQERTKLISNWENMNEESWGHDRMFVQRWNQFGQRFKKSSDYGKNIKFQNSLIRNQKIDQLVTPYLCLTCEKGFKQLIQLKLHNFNHLKDKRLICYVCNLKFADKKHLLRHFRARHVINPKAFPCNFCGKPLKNLRIVRRHDKKHQDKNFYKCIYCDKHFVDDQKFARHIKIHTSWKRHQCPICAMRFLRKPHMVDHMRTHLGVKPYECRHCSKKFTQKSNLRRHLRSLHSDSKSPERRSLDNDVKVETPNLMFAIKELPNDSSNECHLCGKRFTAKKSLKTHMLIHTGEKPEHCNHCGMRFLQKSHLTDHMRIHTGIKPYECSDCDKKFTQKSNLNRHIRIHTGQQPFQCPNCCKKFSLKQTLQLHMRIHTGEEPYECKSCNAKFVQKQSFQRHIRLHLGGKLHECPYCNMKFLQKILFNEHLQVHMGVKKFECGDCGKKFTVKSNLYRHARTMHKGKKTNENQESNPAPFQCPDCGKKFIAERNFDVHMMTHTGENPYECPDCGMGFLRRVRYEEHIKIHVGVKPYKCRDCDKKFTHKSNLARHTKLHSNNKLHQCHVCGQKFIQKQNLALHLTKHSAVSECGDTSNLNMEEQPYKCPDCGKSLSTKKSLQLHITTHTGEKPHQCSVCSKKFSRKYYLNDHMKIHIGYKPHKCSKCDKRFIQTSNFRRHLRIHEKKKTISNDATQPPGTPHQCSLCTKKFVIKRNLTIHMKIHTGQEPYKCLDCGMNFLRKSHYTDHMKIHAGVKPYECRHCGKRFTQKSNLTRHTRLHTNPNYKRHLCHSCGKRFSEKQYLDFHMRMHTGEELYKCFQCRRKFSDKNRLDVHMLSHTGEELHKCPICDKSLTTKKSLQIHIRTHTGEKPHQCSVCRKNFNRKGYLKYHMRVHSGLKPHQCSHCGKRFAQRSNFMRHMRIHINEEPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-