Pser021737.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrochroa serraticornis
Gene Symbol
-
Assembly
GCA_905333025.1
Location
HG995154.1:32101449-32107136[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 1.1e-05 0.00074 20.2 1.3 1 23 224 246 224 246 0.98
2 31 0.051 3.5 8.6 1.4 3 23 254 275 253 275 0.95
3 31 0.038 2.6 9.0 1.5 1 23 282 304 282 304 0.91
4 31 0.03 2.1 9.3 0.2 2 23 329 350 328 350 0.97
5 31 3.9e-07 2.7e-05 24.7 2.9 1 23 356 378 356 378 0.98
6 31 6.1e-07 4.2e-05 24.1 0.9 1 23 384 406 384 406 0.99
7 31 0.0013 0.093 13.5 3.7 1 23 412 434 412 434 0.99
8 31 0.00093 0.065 14.0 4.8 1 23 440 462 440 462 0.98
9 31 0.0017 0.12 13.2 5.8 1 21 468 488 468 490 0.96
10 31 3.7e-05 0.0026 18.4 1.4 1 23 496 518 496 518 0.99
11 31 1.8e-05 0.0012 19.4 6.2 1 23 524 546 524 546 0.99
12 31 0.00038 0.026 15.3 4.4 1 23 552 574 552 574 0.99
13 31 0.0016 0.11 13.3 0.3 1 23 580 602 580 602 0.98
14 31 4.2e-05 0.0029 18.3 3.1 1 23 615 637 615 637 0.98
15 31 5.4e-07 3.8e-05 24.2 1.7 1 23 643 665 643 665 0.99
16 31 5.9e-07 4.1e-05 24.1 2.4 1 23 671 693 671 693 0.98
17 31 0.00012 0.0084 16.8 3.4 1 23 699 721 699 721 0.98
18 31 0.12 8.2 7.4 0.2 3 23 931 951 930 951 0.98
19 31 3.6e-07 2.5e-05 24.8 1.0 1 23 968 990 968 990 0.99
20 31 0.0013 0.093 13.5 3.7 1 23 996 1018 996 1018 0.99
21 31 0.0011 0.08 13.7 2.9 1 23 1024 1046 1024 1046 0.93
22 31 0.0055 0.38 11.6 5.1 1 21 1052 1072 1052 1074 0.96
23 31 2.1e-05 0.0014 19.2 1.4 1 23 1080 1102 1080 1102 0.99
24 31 1.7e-06 0.00012 22.7 4.1 1 23 1108 1130 1108 1130 0.99
25 31 6.6e-05 0.0046 17.7 5.1 1 23 1136 1158 1136 1158 0.99
26 31 0.00018 0.012 16.3 0.2 1 23 1164 1186 1164 1186 0.98
27 31 7.3e-06 0.00051 20.7 3.6 1 23 1199 1221 1199 1221 0.98
28 31 4.7e-07 3.3e-05 24.4 1.3 1 23 1227 1249 1227 1249 0.99
29 31 1.2e-06 8.2e-05 23.2 0.8 1 23 1255 1277 1255 1277 0.99
30 31 0.00015 0.011 16.5 3.3 1 23 1283 1305 1283 1305 0.98
31 31 0.015 1 10.3 0.1 1 20 1311 1330 1311 1332 0.94

Sequence Information

Coding Sequence
ATGAGTTTAAACTGTAGAACTTGTTCACGTGAAATTTTAAACGAAACTGCTTTAAATATTTTTGAAGCCAACAATAAAGAAGATTCAGTGGCGGCGATGTTGCGGCTGTTTGCCTCTGTTACAATATGTGATGAAGACAACCTTCCAAAAATTATTTGCTTAGTTTGTTTCGAAAAACTGAACTTCTCCTACAACTTCCAAAAATTGGTTAGGGCTTCAGATTTCAAATTCAGACAACTCTCACAAAAAGAAGGTGACCTGGGTGAAAATAATCTTTTAAAACCAGAAATGCCTGATGAAAAACTCATTAATTACTCCTTTTCCACTAATGAAACGGTTGGAACGTTTGTGAAGAATGAGACCAATATTTATGAAGACAACTGGGAATTGGCAACTCAAAACGTAATTTTGAAAGTTGAATGTGAAAGTGATGATTTCGCTGAAAATCCACAAGCCATCTGCAGCAATGAATCTCGGGAACCAACAAATTTGTTCCCAAATTTGGAACATAAAGAAGAAATAGGTTACTATGACAAGAATGAACTATTTGTGTGGAGGGGGTTTAAGGGTATTGTGAATGAACCTGACCCACATATTTCTAATCGCCGGAAGAACCACAGATTGCAGGGTGTCCGCGCTAGGCGTCAGAAAATGCTCCAATCTAATGCTTACGTTTGTTGGTATTGTGGGAAAAAGTTTAAACAACTGATACAACTAAAACTTCATCGCTTGAGACACTTGAACCAAAATCGTATTCTCTGCGTTAATTGCGGCGCAAAATTTATTGATAAAAGACACTTTCTTTGGCATTTTCGTGCCCGTCATGCCGAAAATCCACAGAAATTTCCATGTAATGTATGTGGAAAATTACTTAGGAATCTGCATTCGCTAAGGGACCATGACAAGAAACACGCGGCCCAAAACACGTCAAATATTGATATTAAAATTGAGAATGGAGAAGAATTCTTCAAGACAACAACAACACAATGCAAGTTGTGTTATCGCGGTTTTTCTAACGAAATAATTTTGGAGGAACATATGCGGTGGCATACTGAAGGAAAAATTCATCAATGTACTTATTGTGATCGTAGGTTTACTAAAAATTCTCTTCTTATTGCTCACATTCGAACCCATACAGGCGAAAAACCCTATGAATGCAGTGATTGTGGTCGTAAATTTTCTGAAAAAAGTAGTCTCTCGGGTCACATGAAAACTCACACAGGCGAAAATTTTTACAAATGTGATCATTGTGATCGCAGGTTCAATACGGTCTATGATCGCATGATTCATACCCAAACTCACACAGGCGAAAAACTTTTCCAATGCTTTCACTGTTATCGTAAATTTACTCGAGAAATATTTCTCAATAGACACATTCAGATTCATATTGACGAAAAACCGTTTAAATGTCCCCATTGCGATCGGAAATTTGCATTTAAAAGAGACATTACTCGGCATATTCGTTGTCACACACGTGAAAAACCTTTCCAATGCACTCAATGCGATAGTAGATTTTCTCAAAAAATTCTTCTCTCGCGTCACATCCTCACTCATACTGGTGAAAAACCTTTTCAATGCTCTCATTGTGATCATAAGTTTATCACAAAATATAACCTCGATACTCATATTCGAACTCACACAGGTGAAAAACCTTACCAATGTGATCATTGTGATCTTAGATTCAATACATCTAGTGAACGGAAGAGTCACAACCGAACCCACTCAGACGAAAAACCTTTTCGATGTGATTATTGTTCTGCTGAATTTAGAGCAAAAATAAGTCTTGATCGCCACATAGAGACTCATACAGGCGAAAACTCGATTCGCACAGACGAAAAGCGGTTTTGCTGTACTCTCTGTGATCGAAGTTTTGCTAAAACTAGAGCTCTCCAAAACCATATACGAACCCACACAGGCGAAAAACCCTACGAATGTGATGATTGTGGTCGTAGATTTTGTGAAAGTAGCACTCTCTCGCGTCACATTCGAATTCACACAGGCGAAAAACGTCATCAATGTGATTACTGTGATACTAAATTTACTGATAGATCTTCTCTTTGGCGTCACATCTTGACTCATACAGGCGAAAAACCTCATCAATGTAATCACTGTCAACGAGGATTTGCTACAGGTCAAGCTCTCAGAAAACACATCCGTAGCCATACAGATTGTTTTGAAAAACTAAACTTTTCTTATGACTTCCAAGAATTGGTTACGGCTTCGGATTTAAAATTTAGACAACTCTTACAAAGGGGTGATAACCCAGATGAAAATGATCCTTTAAAACTAGAAATGGTTGAGGAAAAATTCATCAATTTTCCGCTTTCCACTAATGAAATTGTTGCAACGGTTGTTAAGAAGGAGACCAATATTTATGAAGACAACTGGGAATTGGCAACTCAAAACGTAATTTTGAAAGTTGATGGTGAAAGTGATTATTTTGCTGGTAATATTTTAGTTTTGTATTTAATTGTTGATAATAAGAGTCAATTTCCTGTAGAAAACCCACAAATAATCTACAGCAATGAACCTCAGGAAACAACAAATTTGTTTCCAAAGTTGGAGTGTAATGAGGAAGTAGGTTACTATAACAAGAATGAAGTATTTGTGTGGGAGGAATTTAAGGGTGTTGTGACTGAACTTGACCCACAAATTTCTAATCGCCGGAAGAACAACAGGAATCTGCATTCGCTAAGGGACCATGACAATAAACACGCGGGCCGAAACTCATCAAATATTGATATTAAAATTGAGAATGGAGAAGAATTCTTCAAGACAACAACAAACCTATGCAAGTTGTGTTATCGCGGTTTTTCTAACGAAATAATTTTGGAGGAACATATGCGGTGGCATACTGAAGGAAAACTCCACCAATGTACCCATTGTGATCGCGAAAAACCCTACCAATGTAGCGATTGTGGTCGTAAATTTTCTGGAAGAGGTAGTCTCTCAAATCACATGAAAACTCACACAGGCGAAAATTTTTACAAATGTGATCATTGTGATCGCAGGTTCAATACAGTCTATGATCGCATGATTCATACCCAAACTCACACAGGCGAAAAACCTTTTCAATGCTTTCACTGTCCTCGTAAATTTACTCGAGAAATATTTCTCAATAGACACATTCCGACTCATATTGACGAAAAACCTTTTAAATGTCCCTATTGTGACCGTAAATTTGCTTTAAAAAAAGACATTACTCATCATATCCGCTGTCATACACATGAAAAACCTTTCCAATGCACTCAATGCGATAGTAGATTTTCACAAAAAGTTCTTCTGTCACGTCACATCCTCACTCACACTGGTGAAAAACCGTTTCAATGTTCTTATTGTGATCATAAGTTTATCACTAAATATAATCTCGTTACTCATATTCGGACTCACACAGGTGAAAAACCTTACCAATGTGATCATTGTGATCTTAGATTCAAAACGAGTAGTGAACGCAAGAGTCACACTCGAACTCACTCAGACGAAAAACGTTTTCGATGTGAGTATTGTGGTGTTGAATTTAGAGCAAAAATAAGTCTTGATCGCCACATCGAAACTCACACAGGCGAAAAACGGATTCGCACAGACGAAAAACGGTTTCACTGTAGTCATTGTAATCGAGAATTTGCCACCCCTAGAGCTCTTCAGAACCATATTCGTACCCATACAGGCGAAAAACCATACGAATGTAGTGATTGTGGTCGTAGATTTTGTGAAAGTAGTGCTCTCTCGCGTCACATACGAATTCACACAGGCGAAAAACGCTACCAATGTGATTACTGTGATACTAGATTTACTGCTAGATCTTCTCTTTGGCGTCACATCTTGACTCACACAGGCGAAAAACCGCATCAATGTAACCACTGTCAACGAGGATTTGCTTCAGGTCAAGCGCTCAGAAAACATATCCGTAGCCATACAGGCGAAAAACCCTTCCAATGCATTTATTGTGATCGTAGATTTTCTGTAGGAGAATCTCTCACGCGTCACATCTCTCTTTGTGATCGTATATTTGTAACAAAAACGGATCTCGTTAATATCTAA
Protein Sequence
MSLNCRTCSREILNETALNIFEANNKEDSVAAMLRLFASVTICDEDNLPKIICLVCFEKLNFSYNFQKLVRASDFKFRQLSQKEGDLGENNLLKPEMPDEKLINYSFSTNETVGTFVKNETNIYEDNWELATQNVILKVECESDDFAENPQAICSNESREPTNLFPNLEHKEEIGYYDKNELFVWRGFKGIVNEPDPHISNRRKNHRLQGVRARRQKMLQSNAYVCWYCGKKFKQLIQLKLHRLRHLNQNRILCVNCGAKFIDKRHFLWHFRARHAENPQKFPCNVCGKLLRNLHSLRDHDKKHAAQNTSNIDIKIENGEEFFKTTTTQCKLCYRGFSNEIILEEHMRWHTEGKIHQCTYCDRRFTKNSLLIAHIRTHTGEKPYECSDCGRKFSEKSSLSGHMKTHTGENFYKCDHCDRRFNTVYDRMIHTQTHTGEKLFQCFHCYRKFTREIFLNRHIQIHIDEKPFKCPHCDRKFAFKRDITRHIRCHTREKPFQCTQCDSRFSQKILLSRHILTHTGEKPFQCSHCDHKFITKYNLDTHIRTHTGEKPYQCDHCDLRFNTSSERKSHNRTHSDEKPFRCDYCSAEFRAKISLDRHIETHTGENSIRTDEKRFCCTLCDRSFAKTRALQNHIRTHTGEKPYECDDCGRRFCESSTLSRHIRIHTGEKRHQCDYCDTKFTDRSSLWRHILTHTGEKPHQCNHCQRGFATGQALRKHIRSHTDCFEKLNFSYDFQELVTASDLKFRQLLQRGDNPDENDPLKLEMVEEKFINFPLSTNEIVATVVKKETNIYEDNWELATQNVILKVDGESDYFAGNILVLYLIVDNKSQFPVENPQIIYSNEPQETTNLFPKLECNEEVGYYNKNEVFVWEEFKGVVTELDPQISNRRKNNRNLHSLRDHDNKHAGRNSSNIDIKIENGEEFFKTTTNLCKLCYRGFSNEIILEEHMRWHTEGKLHQCTHCDREKPYQCSDCGRKFSGRGSLSNHMKTHTGENFYKCDHCDRRFNTVYDRMIHTQTHTGEKPFQCFHCPRKFTREIFLNRHIPTHIDEKPFKCPYCDRKFALKKDITHHIRCHTHEKPFQCTQCDSRFSQKVLLSRHILTHTGEKPFQCSYCDHKFITKYNLVTHIRTHTGEKPYQCDHCDLRFKTSSERKSHTRTHSDEKRFRCEYCGVEFRAKISLDRHIETHTGEKRIRTDEKRFHCSHCNREFATPRALQNHIRTHTGEKPYECSDCGRRFCESSALSRHIRIHTGEKRYQCDYCDTRFTARSSLWRHILTHTGEKPHQCNHCQRGFASGQALRKHIRSHTGEKPFQCIYCDRRFSVGESLTRHISLCDRIFVTKTDLVNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-