Pser021327.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995154.1:28577076-28584109[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.018 18 5.4 0.0 27 39 53 65 53 68 0.88 2 3 1.2e-19 1.3e-16 60.4 0.0 1 45 82 127 82 127 0.98 3 3 3.6e-17 3.6e-14 52.5 0.0 1 40 134 174 134 177 0.93
Sequence Information
- Coding Sequence
- ATGGCGGAGGCGCCGGGAAATGCTGAAGGTCGCCGAGGTCATTCGTTCAGTAAGTACACAGAGTGCATGTGCGCTTGCATGCATGCCTGCACTTTCGCCCGCTGTTTCACCCGGAAATCTCCGGAAATCGTCCGGGCGCCTCCGCCACGGCCACCAGGAATTCCGAGCAGCACTCTGTACAAAATAGCGAGACGAGAAGGGATACGGTTGGCGGCGCCCTTTAACGCCGCCCCGACGACGTGGACGCCCGAGGACCTAGAAAAGGCGTTGGAATCTATCAGATCCGGCCAAACATCAGTACAAAAAGCCTCAACCGAATTCGGAATTCCCACGGGAACTCTTTATGGCAGATGTAAAAGAGAAGGAATCGAGCTATCGCGATCGAATCCCACCCCTTGGTCAGAGGATGCCATGGGAGAAGCTCTGGAAGCGGTCAGGCTGGGACATATGTCCATAAATCAAGCTGCCATTCATTATAATCTGCCTTACTCATCGTTATATGGCAGATTTAAGAGGGGAATTAAGTATGAGGCTGATATCGAGCCTAATTCTGACAGTCAGACCCAGATAGATAGTCACAGTTACGGGATGGAATATGTGAATACTCATCAACAAATTCAATACCAGAATCAAACAAACAGCTGA
- Protein Sequence
- MAEAPGNAEGRRGHSFSKYTECMCACMHACTFARCFTRKSPEIVRAPPPRPPGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYEADIEPNSDSQTQIDSHSYGMEYVNTHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -