Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.26 9e+03 -1.3 0.9 15 18 17 20 16 21 0.82

2 12 1.3e-05 0.45 12.4 16.9 1 19 54 72 54 72 0.98

3 12 1.1e-05 0.38 12.7 10.4 1 19 113 135 113 135 0.88

4 12 1.2 4e+04 -3.4 2.2 6 10 165 169 165 169 0.94

5 12 0.00078 27 6.8 7.4 1 11 175 185 175 186 0.95

6 12 0.0094 3.2e+02 3.3 0.4 3 10 189 196 188 196 0.91

7 12 8.4e-07 0.029 16.3 14.0 3 19 204 220 202 220 0.92

8 12 1 3.5e+04 -3.2 2.2 14 18 248 253 247 254 0.59

9 12 0.00021 7.2 8.6 9.1 10 18 267 275 264 276 0.92

10 12 1.1 3.8e+04 -3.3 0.2 9 11 282 284 281 286 0.73

11 12 1.4 4.8e+04 -3.6 0.8 15 18 302 306 301 307 0.54

12 12 4.1e-09 0.00014 23.7 9.7 1 16 312 327 312 328 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.26	9e+03	-1.3	0.9	15	18	17	20	16	21	0.82
2	12	1.3e-05	0.45	12.4	16.9	1	19	54	72	54	72	0.98
3	12	1.1e-05	0.38	12.7	10.4	1	19	113	135	113	135	0.88
4	12	1.2	4e+04	-3.4	2.2	6	10	165	169	165	169	0.94
5	12	0.00078	27	6.8	7.4	1	11	175	185	175	186	0.95
6	12	0.0094	3.2e+02	3.3	0.4	3	10	189	196	188	196	0.91
7	12	8.4e-07	0.029	16.3	14.0	3	19	204	220	202	220	0.92
8	12	1	3.5e+04	-3.2	2.2	14	18	248	253	247	254	0.59
9	12	0.00021	7.2	8.6	9.1	10	18	267	275	264	276	0.92
10	12	1.1	3.8e+04	-3.3	0.2	9	11	282	284	281	286	0.73
11	12	1.4	4.8e+04	-3.6	0.8	15	18	302	306	301	307	0.54
12	12	4.1e-09	0.00014	23.7	9.7	1	16	312	327	312	328	0.96

Coding Sequence: ATGTGTCTCCAATCTAATAAAATACACCTTTCTAATACAAAACTCTCCTGTCCAGTGTGCTACTGCCCGGCAGCGAAGAGCCGTTCGGTCGCGTGCACTCGCGACACGGGCCACGAGAAGCACTGGTCGTGCGGCGAGGCGTGTTCGCGCGTGCTCGCGTGCGGGCACCACGTGTGCACGGAGCCGTGCCACGCGCCGCCGTGCGCGCCGTGCCGGCTGCTGCCGCGGCGCGTCGTCACGTGCCCGTGCGGGAAGAACAAACTGGACAAAGACTCGCGTAAATCTTGCACTGATCCGATTCCCCTGTGCGGCAATATCTGTGCGAAGCCCCTGCCGTGCGGTCCCGCTGGTGATAGACACTTTTGCAAGCTAGACTGTCACGAAGGTGAATGCCCCATATGCCCCGACAAGACGCTAGTGCAGTGCCGCTGCGGGCACTCGACGCGCGAGGTGGCGTGTTCCGAGCTGCCGCAGATGCTCAACAACGTGCTGTGCCAGAAGAAGTGCAATAAGAAACTATCCTGCGGCCGTCACCGCTGCCGCACCGTATGCTGCGCGGCGTCATCCCACCGCTGCGCTGTGGTGTGTGGACGGACCCTCTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGCCACACGGGCCACTGCGCGCCCTGTCCGCGCGTCAGTTTCGAAGAGCTCCGATGCACGTGCGGCGCCCAAGTGGTGCTCCCCCCGGTGCGCTGCGGCACGCGCGCCCCTCCCTGCGACGCGCCGTGCCGCGAGCGACGCGCCTGCGCCCACCCGCCTCACCACTCCTGCCACACCGGCGCCTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGACAGCACGAGGAGCGCAAAACTATACCGTGTTCGCAAGAAGAGTTCTCATGCGGGCTTCCTTGTGGGAAACCGTTGCCGTGCGGGAAGCACACCTGCATCAAGACCTGCCACAAGGGCGAGTGTGATACTGGCAAGTAA
Protein Sequence: MCLQSNKIHLSNTKLSCPVCYCPAAKSRSVACTRDTGHEKHWSCGEACSRVLACGHHVCTEPCHAPPCAPCRLLPRRVVTCPCGKNKLDKDSRKSCTDPIPLCGNICAKPLPCGPAGDRHFCKLDCHEGECPICPDKTLVQCRCGHSTREVACSELPQMLNNVLCQKKCNKKLSCGRHRCRTVCCAASSHRCAVVCGRTLSCQLHRCEEFCHTGHCAPCPRVSFEELRCTCGAQVVLPPVRCGTRAPPCDAPCRERRACAHPPHHSCHTGACPPCVVLTTKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGECDTGK

Sequence clustering based on sequence similarity using MMseqs2