Ppur037818.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001656.1:23968401-23973674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0023 0.39 13.1 2.8 2 23 229 251 228 251 0.96 2 11 0.018 3 10.3 2.7 1 23 258 280 258 280 0.92 3 11 1.1e-05 0.0019 20.4 1.7 2 23 287 308 286 308 0.97 4 11 0.00014 0.024 16.9 0.3 1 23 314 336 314 336 0.97 5 11 0.00062 0.11 14.9 1.2 1 20 345 364 345 367 0.92 6 11 0.00021 0.035 16.4 1.1 6 23 377 394 373 394 0.95 7 11 0.22 37 6.9 0.5 1 12 400 411 400 414 0.86 8 11 0.83 1.4e+02 5.1 0.1 9 23 448 462 446 462 0.85 9 11 0.22 37 6.9 0.5 1 12 468 479 468 482 0.86 10 11 0.83 1.4e+02 5.1 0.1 9 23 516 530 514 530 0.85 11 11 9.5 1.6e+03 1.7 1.5 1 9 536 544 536 544 0.89
Sequence Information
- Coding Sequence
- ATGAAGCCGATTAATTATATCACAGTAAAACAAGAACTAAAAGATAATAGTTTAGATAACAGCTGTGAACCTGAACCCATCGAAATACCTTTACATTTGCTACAATTCCTGAGTTCCAAAGATCAAAGTAAGCTACAGAGCCTATGCAGAGTATGCTTCAACTgtataaaagaagaagaagatataaATTCCTTAATATCTACTTATGATAATGTAGCATTCAGTGacataataaagttattcaCTACTGTACATATAACAGCAGCAGATGGTCTTCCCTTCAATTTATGTATTACATGCAAGTCAGATGCTTTTCAGTGCTACAAATTCAGAACAAAATGTGAAAAATCTGACTGTATCTTGCAGTCATTAATAAAAGATGAATTTGTATTGAAAAAAGAATCTCATGAAACCAAAagTGAAGAAGTTCTGCCTTATCTAGCAGAGGAGATAATTGCTGGTGATCTcaatgacataaaaataatagaatCTAATGAAGtcaaGGAAGAATGTTATTTAGAGTTGGAAGAACTCGATGACAAGTTTTTAAGTGAAGATGAGGATCTTTGTATAGTCCATAAATTGGGTGAACAAgaaaaAAATCAGCTGGATATCACTTTAACTGGTTCAAAGTCCTCAGTTTGCAAAGAAATGTCAAAAGCCAAGGGTGCTGAGAAGCAGAAATCTTGTACCTTCTGTTCTAAGAAATTTGGAAAGCTCAAGAATCTCAGGGAGCATATACTACGGAAGCACAGTTCGGAAGAGCACTCGCATCCGTGCAGCCAGTGCAAGGAGATATTCTCGTCCGAACATGATCTGCACGTGCATTCCGTCGTACACAGTCCAGGCCCAGTGTGGAGCTGTAATATTTGCCAAAAGGAGTTCAAAGTGAAACAGAAGCTACGCAGACACATCCAGCGACACATGCACGCAAAGCGCTTTCCGTGCGACGCGTGCGGCAAAGCGTTTTGCGAAATGACCGCCTTGCGGCGACACGCGCGCGTGCACACCGGCCAAGCGCTGGAGAAGAAGTTCGCATGTCAGCTGTGCGATAAGAGGTATAGCGAAAGCAGCGCTCTGTCGCACCACATGTGGCGGCACAGCGGCGAGCGcgcgtgcgcgtgcgcgtgCGGCAAGGCGTTCGCGACGCCGCGGCTGCTGCGCTCGCACCGGCGCACGCACGACGACGCCAAGCCGCACCAGTGCCGCTACTGCGACAAGCGGTACAGCGGTCGCGACGCCGCGGCTGCTGCGCTCGCACCGGCGCACGCACGACGACGCCAAGCCGCACCAGTGCCGCTACTGCGACAAGCGGTGAGACATGTTCAGTACACAGGTACAGCGGTCGCGACGCCGCGGCTGCTGCGCTCGCACCGGCGCACGCACGACGACGCCAAGCCGCACCAGTGCCGCTACTGCGACAAGCGGTACAGCGGTCGCGACGCCGCGGCTGCTGCGCTCGCACCGGCGCACGCACGACGACGCCAAGCCGCACCAGTGCCGCTACTGCGACAAGCGGTGAGACATGTTCAGTACACAGGTACAGCGGTCGCGACGCCGCGGCTGCTGCGCTCGCACCGGCGCACGCACGACGACGCCAAGCCGCACCAGTGCCGCTACTGCGACAAGCGGTGA
- Protein Sequence
- MKPINYITVKQELKDNSLDNSCEPEPIEIPLHLLQFLSSKDQSKLQSLCRVCFNCIKEEEDINSLISTYDNVAFSDIIKLFTTVHITAADGLPFNLCITCKSDAFQCYKFRTKCEKSDCILQSLIKDEFVLKKESHETKSEEVLPYLAEEIIAGDLNDIKIIESNEVKEECYLELEELDDKFLSEDEDLCIVHKLGEQEKNQLDITLTGSKSSVCKEMSKAKGAEKQKSCTFCSKKFGKLKNLREHILRKHSSEEHSHPCSQCKEIFSSEHDLHVHSVVHSPGPVWSCNICQKEFKVKQKLRRHIQRHMHAKRFPCDACGKAFCEMTALRRHARVHTGQALEKKFACQLCDKRYSESSALSHHMWRHSGERACACACGKAFATPRLLRSHRRTHDDAKPHQCRYCDKRYSGRDAAAAALAPAHARRRQAAPVPLLRQAVRHVQYTGTAVATPRLLRSHRRTHDDAKPHQCRYCDKRYSGRDAAAAALAPAHARRRQAAPVPLLRQAVRHVQYTGTAVATPRLLRSHRRTHDDAKPHQCRYCDKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -