Ppur032637.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001654.1:3361407-3397021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.062 11 8.6 0.7 1 23 286 310 286 310 0.92 2 12 0.0018 0.31 13.4 2.2 2 23 423 445 422 446 0.93 3 12 0.0056 0.95 11.9 0.0 1 23 451 473 451 473 0.96 4 12 0.03 5.1 9.6 0.1 1 23 483 506 483 506 0.89 5 12 6.5e-07 0.00011 24.3 3.1 1 23 511 533 511 533 0.98 6 12 2.1e-05 0.0036 19.5 1.3 1 23 713 735 713 735 0.97 7 12 0.00015 0.025 16.9 4.9 1 23 741 763 741 763 0.98 8 12 2.6e-07 4.5e-05 25.5 0.3 1 23 769 791 769 791 0.98 9 12 0.0016 0.27 13.6 4.7 1 23 797 819 797 819 0.97 10 12 0.0032 0.54 12.7 1.1 1 22 825 846 825 846 0.94 11 12 0.0015 0.25 13.7 0.6 1 23 853 875 853 875 0.98 12 12 2.2e-05 0.0037 19.5 1.4 1 23 881 904 881 904 0.95
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTCTACAACTCTACAGTTTGTAGATTATGTGGAGAAGAAAATGATAACGGGACTTTGCTATATTCAGCAGCAGAAAATAATCAAAGCCTGGGTGAACTTATCAACACTTATCTACCCCTAAAGGTGTCTGATGATGGCGAGTTGCCTCGCACAATATGTCCTGGATGCACCATACAGTTGGAAGCCACAGTTGAGTTTCTAACTCTCATCTTCAATGGCCAGAAAACTATACGTGACCTCTACCAAAGAGAGAAAGAATTTAAGTGCACCAGCACATACACCTTGacagaagaaaatattttgactgACAGTATTGTTTATGAGATACCAAGTGATGGCGTATACCCATCCGACCACCCGGCGACCCTGGCGGCGGCTGGTCTCGACAAGCCCAAACGCAAGCGCGGCCGCCCGCCCAAGAAGACCAAAGCCAATCTTGAGAAGGCGCAAGAAGCCCTGCGTCTACAGGAGCAGCAGAAAGCAGAAGTTACGGAGGAGCCTAGCGGAAAGCGCAGGAGGAAGACGCCTACACGGTTCAAGGAGGTAGTCCAGGGTCAAGAACTGGAGAGGATATTCAAAGAGCAAGGCGTGATCGACGGTGAGGAGAGCGACCATGAAAACAGGCTGGAGTCGAAGTCCGACGCGCCGCCCTCGCCGCGAAGGCCGGAGGTCATCGGCCACAGGCAGGACTCGGGCGAGCTCGTCGTTGTTGTGAAGGGCAAGGGCCGCGGGAGGCCTAAGGGACGCATGCGTCCACAGCATCACGTGTGCGCAATCTGCGCCACGGAGTTCACGTGCGTGGGGCGCTACATGTCGCACGTGGCGCAGCACGGGCCCGTGCAGTACCGCTGCGCGCAGTGCGGGGACACCTTCGACACGCGGCTCGCCTTCACCGACCACCAGCAGCGCAGCCAGCATGAGGGACAGCGAGTGATCGAGGCGAGTGCCTGTGCTACTTACCTAAAACCTTCCCACGCTGAAATCATTATCGAGGCCGAAAAGGACCCCCTGAAAGTGGAGACCAACGATTCCGCGGCACCCGCTCCCCCCGCGCCGGCCTCCAGTTTGCCCGACCTGGGCGTTGAACCCCTGGAAGTGACGACACAAGAGTCTAAAGATGAGCAGGGGGCGCCATTGGTCACTGATACCAATGGTGACAAGGAGATTCCTAGTGGTAGTACAAATGTAACGGAAGTACCTGAAAAGACTGAAAACGGTGAGGAGGATAACAACAAGAAGGGCAAGCAGAAGCTGCAGTGCAACCTCTGCGACAAGGTGTTCAGCAACAAGCAGAGCAAGTCGCTACACATTAAGGCGACGCACCATGGCGAGCGGCCGTACGCGTGCGCGGAGTGCGGCGCCAAGTTCGCGTACCCGCGCTCGCTGTCGCTGCACGCGCTGTCGCACCGCCGCGCGCGCCCGCACGCGCGCGCCTACGCCTGCGACCTCTGCGGGAAGGTGCTGAACCACCCGTCGTCGGTGGTGTACCACAAGGAGGCGGAGCACGCTGGCATGCGCTACGTGTGCAGCACTTGCGGCAAGTCCTTCAAGCACAAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGGTGAGATGTTACTGTCTCCAGCAGCACGAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGGTGAGATGTTACTGTCTCCAGCAGCACGAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGGTGAGATGTTACTGTCTCCAGCAGCACGAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGGTGAGATGTTACTGTCTCCAGCAGCACGAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGGTGAGATGTTACTGTCTCCAGCAGCACGAGCAACTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGGTGAGGTGTTACTGTCTCCAGCAGCACGAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAGCTGCAAGACCTGCGACTCATCGTTCAAAACGAAGGCGAATCTGATCAACCACCAGCTCCTGCATTCCGGCGTGAAGAAGTTCTCCTGCGAGATCTGCAAGCACAAGTTTGCGCACAAGACCAGCCTCACACTGCACATGAGGTGGCACACTGgTTCCAAGCCCTACTCCTGCGGCGAATGCGGCAAGTCGTTCAGTCAAAAAGGCAACTTATCAGAGCACGAGCGCATCCACACGGGGGAGAAGCCCTACGCTTGCGCACATTGCGGGAAGCGCTTCACCACTTCATCGCAGCACAGACTCCATGCGAGACGGCACGCGCCGGAGCGACCGCACGCGTGTCACCTGTGTGGAAAGAGGTTCCTGTCGTTGGGCTCGTACCAGGCGCACATGCGTCGCGAGGCGGGCGCGCGGCCGCACCGCTGCTCGTCGTGCCCTCGCGCGTTCGCGGAGCGCTGGGCGCTGCTGAAGCACGCGCGCCGCCACACCGGCGAGCGGCCGCACCGCTGCCCGCACTGCGCGCGCGCCTTCGCAGACCCCTCCAACCTCGCCAAGCACAAGAAGCAAGTGCACAAACAGATCAGCCTACTCGCGCCAACCCCCGTCGCCATCTCGGTCCCCGCCGCGCCGGTCCCTGATGATACGCAAAACGAGACTGAACGagttatatacgtcgcgtacgACGTCGACGAAGACGAGTCTGCGTACACTATTATTGATTCAGAGCAGACGTTGGAGCTACAGCCCGAGGCGCTGGACTCGCCTCCGCCGCAAGTTCACATGCCGGTGACGGACGAGCAAGGCAACCCGCTGCACTTCACGATGCAGGACGGCACGCGGCTGGCGATCACGTCGACGGACGGCAGGACGCTGCAGGTCGTCACGCGCGACGGGCAGACCATCCCCGTCGAGATCAACGCGTACGCGGACGCGGAGGAGGTGGACAACCCGGACACGATCGTGCACCAGCTGAACCTGCAGAAGAGCGTGGAGGTGGGCGCCGCCGAGCCCGTCACGCAGTACTACACCATCGTCTAG
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSAAENNQSLGELINTYLPLKVSDDGELPRTICPGCTIQLEATVEFLTLIFNGQKTIRDLYQREKEFKCTSTYTLTEENILTDSIVYEIPSDGVYPSDHPATLAAAGLDKPKRKRGRPPKKTKANLEKAQEALRLQEQQKAEVTEEPSGKRRRKTPTRFKEVVQGQELERIFKEQGVIDGEESDHENRLESKSDAPPSPRRPEVIGHRQDSGELVVVVKGKGRGRPKGRMRPQHHVCAICATEFTCVGRYMSHVAQHGPVQYRCAQCGDTFDTRLAFTDHQQRSQHEGQRVIEASACATYLKPSHAEIIIEAEKDPLKVETNDSAAPAPPAPASSLPDLGVEPLEVTTQESKDEQGAPLVTDTNGDKEIPSGSTNVTEVPEKTENGEEDNNKKGKQKLQCNLCDKVFSNKQSKSLHIKATHHGERPYACAECGAKFAYPRSLSLHALSHRRARPHARAYACDLCGKVLNHPSSVVYHKEAEHAGMRYVCSTCGKSFKHKQLLQRHQLVHSQHRPFSCKVRCYCLQQHEQLLQRHQLVHSQHRPFSCKVRCYCLQQHEQLLQRHQLVHSQHRPFSCKVRCYCLQQHEQLLQRHQLVHSQHRPFSCKVRCYCLQQHEQLLQRHQLVHSQHRPFSCKVRCYCLQQHEQLLQRHQLVHSQHRPFSCKVRCYCLQQHEQLLQRHQLVHSQHRPFSCKTCDSSFKTKANLINHQLLHSGVKKFSCEICKHKFAHKTSLTLHMRWHTGSKPYSCGECGKSFSQKGNLSEHERIHTGEKPYACAHCGKRFTTSSQHRLHARRHAPERPHACHLCGKRFLSLGSYQAHMRREAGARPHRCSSCPRAFAERWALLKHARRHTGERPHRCPHCARAFADPSNLAKHKKQVHKQISLLAPTPVAISVPAAPVPDDTQNETERVIYVAYDVDEDESAYTIIDSEQTLELQPEALDSPPPQVHMPVTDEQGNPLHFTMQDGTRLAITSTDGRTLQVVTRDGQTIPVEINAYADAEEVDNPDTIVHQLNLQKSVEVGAAEPVTQYYTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -