Ppur042947.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001659.1:13400637-13407293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.59 1e+02 5.5 0.2 2 23 221 243 220 243 0.93 2 13 3.5 5.9e+02 3.1 0.2 5 23 252 270 250 270 0.92 3 13 0.0028 0.48 12.8 4.3 1 23 304 327 304 327 0.93 4 13 0.49 84 5.8 0.2 5 23 336 354 335 354 0.94 5 13 0.012 2 10.9 2.0 2 23 361 382 360 382 0.96 6 13 7.2e-05 0.012 17.8 0.6 1 23 390 412 390 412 0.97 7 13 0.00044 0.076 15.4 1.4 1 23 421 444 421 444 0.97 8 13 0.00031 0.053 15.8 0.2 1 23 450 472 450 472 0.97 9 13 2.4e-07 4.2e-05 25.6 2.6 1 23 478 500 478 500 0.98 10 13 0.00016 0.028 16.7 1.1 1 23 505 527 505 527 0.98 11 13 1.2e-05 0.002 20.4 5.1 1 23 533 555 533 555 0.97 12 13 0.0011 0.19 14.1 2.1 2 23 562 584 561 584 0.95 13 13 3.2 5.4e+02 3.2 2.2 5 23 623 642 619 642 0.87
Sequence Information
- Coding Sequence
- ATGGCTATGAACATAAAAGACTTGTGCAGACTTTGTGCCAAAAAAGAGGActttattaaagatttattcGATGCTAGCAATGAAAGtgtattgaaattaataaaggACCTAGTTCAAATTTCGATACACGAGAATGATGACTTACCAACTAAAATATGTTTGAATTGTGAAGAGAAAATGGTGTCGTTCCAACTGTTTGTTTTGGAATGTTTGAAGGCTCAAGataccttaaaaaatatatgctatGGATTATCTGAAGATGTAAGGGTAAAGCTAGAATTAGATTTTGCAGACTCGATAGTAAAATCAGAGGTAAAAGATGAGTTGATTGCAGATGATGTTCTGTgtaCAATAAATAACAGAAATGTTATCACAGTCCTAGACAAAAGTgataattttcatgatttttcacATCATGATGATGGTCATGaggaggatgatgatgatgatgacgatgactaTATGGACAATGTAACACTGGCTTCACTTAAAGATGAGAAGATTCATGATATAGTCAGTGAAATTGCAGTAAAGGAAAAAGGGCCTAAACAGGAAAAAACTAAGCGATATAAGAAAAAAGCAATATCTGAAGATTTTGCAAAATCTGTACATAAAGTTACAAACAAATCAGATTGGAAAATCAGAGACTTTGTTAAACTGCAGTGTGATCGTTGTGACCTGGAAATGAAGGCATGGAGTGAATTGCGTCTTCACTACTACAAAGTCCATAAAAGTAAACCATCAGTCAATTGTGTTTGTGGTTTTGTAATAAGATCTAAAAGTGTCCTTTATAAACATGTATCAGACCATAAagtcaaaaatcaaaaatcaagcaCTACAGATAATGATGATGCAAAAACAGAAGAGGATACTAAGTATTCCAGTCTCAAAATTTATGACTTTGTTACGTTTAATTGTACTGtatgtcaaaaaaaatgctCTAGCTGGTACACATTGAAGTCTCACAGTGAACGGACCCACAAAATAGCTCCAGTTGTACAATGTGTTTGTGGAATCACACTGAAATCTAAATCAGTATTATACAAACATGTTCAAGATCACAAAAATCCAAATATGCTATGCTGTGATAAATGTCCAAGGATCACAAAAACAGTGGAAGCACTTAACAAGCACAAGATGAGGCACATACCAAAATCAGAAAGGAAATTCATATGTGGTAGttgcaaaaaaatttttataactAAAGATGCATTAAAATCTCATGAACGATCTCACATACCTATTGAAGACAGGAAAATATTCCATTGCGGAATTTGTGACCAGAAGTTCACAACTCGCTCCTCTGCGGCGTCTCACAAGCGTGTGGTGCACGACAAGATAAAGAGTTACGTGTGCGACCTCTGCGGGTACGCGTGCGGAACCAACGGCGAACTGCGGCAGCACCGCGCCATACACAGCGACGACAAGCCCTACGTCTGCCCGACATGCTCCAAGCCGTTCAAAACGCACTCGAATCTGAAGACGCACATGGACACGCACGAGGACACGTCGTACCAGTGCTACGTGTGCAACCGCGTGCTGAACAGCCGCCGCACGCTGCGCAAGCACCTGCTCGTGCACGAGGAGAAGTGCCGCCACGTCTGCCCCTACTGCCACAAGGCGTTCAAGCGCCGCCAGACGCTCAAGGTGCACCTATACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGAGGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGCCGCGCAGCCGCACGCCTACGGCTACGCGCACCACTCCGCCGTGCCCATGCCCGGGCAGGACGCACCCATCGCGGTAATGTATCGCTTGTGTCgtctgtatgtgtgtgtgtgtgtggtcaCAGACGCATCCACGCTGCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGCCGCGCAGCCGCACGCCTACGGCTACGCGCACCACTCCGCCGTGCCCATGCCCGGGCAGGACGCGCCCATCGCGGTAATGTAG
- Protein Sequence
- MAMNIKDLCRLCAKKEDFIKDLFDASNESVLKLIKDLVQISIHENDDLPTKICLNCEEKMVSFQLFVLECLKAQDTLKNICYGLSEDVRVKLELDFADSIVKSEVKDELIADDVLCTINNRNVITVLDKSDNFHDFSHHDDGHEEDDDDDDDDYMDNVTLASLKDEKIHDIVSEIAVKEKGPKQEKTKRYKKKAISEDFAKSVHKVTNKSDWKIRDFVKLQCDRCDLEMKAWSELRLHYYKVHKSKPSVNCVCGFVIRSKSVLYKHVSDHKVKNQKSSTTDNDDAKTEEDTKYSSLKIYDFVTFNCTVCQKKCSSWYTLKSHSERTHKIAPVVQCVCGITLKSKSVLYKHVQDHKNPNMLCCDKCPRITKTVEALNKHKMRHIPKSERKFICGSCKKIFITKDALKSHERSHIPIEDRKIFHCGICDQKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPYVCPTCSKPFKTHSNLKTHMDTHEDTSYQCYVCNRVLNSRRTLRKHLLVHEEKCRHVCPYCHKAFKRRQTLKVHLYTHTGDKPLTCKWCEERFAYASTLRSHRLRCHPDKMAAQPHAYGYAHHSAVPMPGQDAPIAVMYRLCRLYVCVCVVTDASTLRSHRLRCHPDKMAAQPHAYGYAHHSAVPMPGQDAPIAVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281574;
- 90% Identity
- iTF_01279578;
- 80% Identity
- -