Ppur062281.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001672.1:9586673-9599683[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00025 0.042 16.2 0.7 1 23 251 274 251 274 0.97 2 10 0.003 0.51 12.8 0.2 2 23 305 327 304 327 0.92 3 10 0.00056 0.096 15.0 1.1 1 23 349 371 349 371 0.98 4 10 0.005 0.84 12.1 0.1 1 23 375 398 375 398 0.91 5 10 0.0012 0.2 14.0 1.3 1 23 405 428 405 428 0.95 6 10 0.45 77 5.9 2.8 1 20 434 453 434 457 0.76 7 10 4.1e-08 6.9e-06 28.1 1.3 1 23 464 486 464 486 0.99 8 10 0.0015 0.26 13.7 1.2 2 23 493 514 492 514 0.96 9 10 6.4e-06 0.0011 21.1 3.1 1 23 520 542 520 542 0.98 10 10 7.2e-06 0.0012 21.0 1.4 1 23 548 572 548 573 0.96
Sequence Information
- Coding Sequence
- ATGGAATTGGATGTCGTGAATAAATATGGGCAGTGCCGGTGCTGTTCTGAGATGGGAAGACACAAAGATCTTGATAAGCTTTCGCCAAATACTAAACTATCAAAACTTATATGCAGTGAGTGCATCACAAAGCTCAGAACAGCCAGCAGTTTTAAGATGCTTGTTGTGAACACTGAAAAGCAGTTGTTAGAAGCGTTGAATTCTGGTCAAAacaatCTAAAAAGCAGCATGGGAGATATCAAGGTAGAACTGCAATGCTCCACATCTGTTAAGGTAGAACAGACAGTTTGTAGCGATGAAGAGTGGCCTAGTGATCAACCTGATGAAAACATAACTTACCAAGataaaGCACCAAAGAACAATCTAGTAGAAGGCGAAGCAGAGTTAATAGCAAGGTTTGCGTCTCTCAAATCCTTGCCGAGAAAGCCAGAACTCAAGATTTTATGTCAGAATTTTGTTAAACACATGGAGATACTAAAAGGAAAAGTAATCACTGGCAAATCTTTAGAGAGATTACTTCGCAGAGGCAGTAATGTAAGAAAGGCTTTTCAAACACTTAAAACAGTATCTGGTGCTCTAGATACGCCTCATCATAGAACAGAGTGCAGGCAGAGCGAAGCAATGGACATATCggatattaataaagttaaaaatccaAATACTATAGAACGCCTCACACATGCCACCAACATTTCGACTATACTAGAATTCTCCAATGTCACCGCATTCAAATCCAAATTCCAACGGGCATATCCCTGTTTCTACTGTGAAAAACTCTTTGAAGACTTCGAAGAACTGAAACAGCACCAAAGGTTAGAccatgtcaaaaataatttaagtaaatgtgTGCTACAAAAGTATAAAGTGGGAAGACCTGATGGAGTTGTAGTATATGTGGATATATCAGACTTAAAATGCACAGAATGCGATAAAGATATACCAACCCTTAATGATTTGAAGAAACATCTAACCGAAGAACATCAAAAGAAAATGTATCTGAATGTGACGGATAGAGTTATTCCCTTCAAAGTGaaagaaaacaattttgaaTGTCAAATCTGTGGAAATCATTACGAAACGTTTGGCTCAATAGAAAGGCATATGAATACACATTACAGTAATTATGTTTGTGACGAGTGTGGCTCAGGTTTTGTAACCAAACAGAGGTTAAAAATACATGGATATGTCATGCATTCTACGAGATCAAAACAGCATCCTTGTGGAGTGTGCCAAAAGACGTTCAACTCCCAGCAGAAAATGAAATATCACGTTGCCACAGTACATGAGAacgttaaaaaatacaaatgcaaCCGTTGCCCTGAACGTTTCAATGAATACTTTCGCAGGCATAAACACATGGTTTTAGTTCACGGGGTAGCTCCTTTGGAATATAAGTGTAATGTGTGTGATAAATCTTTTGAAAGGCGGTACGGACTGTCCATACACATGCGAACGCATATACAGCAAAAGGATGTTTACTGTGAGATATGTCCTTACAGATGTTTTACTAAAGGCGAACTGAGGTATCACATGGTTAAACATAATGGTGAAAGGATCCACAAGTGCTCTGTGTGTAAAAAGTCTTACGCAAGGGAGAAAACTTTGAAAGAACACATGCGGATTCATACGAACGATAGGAGATATGTATGCCCTGTTTCTGAGTGTGGGCAGGCGTTTATACAGAACTGTAGCCTGAAAAGCCACATTAGAAGTCACCATCAAGATTATAGATGa
- Protein Sequence
- MELDVVNKYGQCRCCSEMGRHKDLDKLSPNTKLSKLICSECITKLRTASSFKMLVVNTEKQLLEALNSGQNNLKSSMGDIKVELQCSTSVKVEQTVCSDEEWPSDQPDENITYQDKAPKNNLVEGEAELIARFASLKSLPRKPELKILCQNFVKHMEILKGKVITGKSLERLLRRGSNVRKAFQTLKTVSGALDTPHHRTECRQSEAMDISDINKVKNPNTIERLTHATNISTILEFSNVTAFKSKFQRAYPCFYCEKLFEDFEELKQHQRLDHVKNNLSKCVLQKYKVGRPDGVVVYVDISDLKCTECDKDIPTLNDLKKHLTEEHQKKMYLNVTDRVIPFKVKENNFECQICGNHYETFGSIERHMNTHYSNYVCDECGSGFVTKQRLKIHGYVMHSTRSKQHPCGVCQKTFNSQQKMKYHVATVHENVKKYKCNRCPERFNEYFRRHKHMVLVHGVAPLEYKCNVCDKSFERRYGLSIHMRTHIQQKDVYCEICPYRCFTKGELRYHMVKHNGERIHKCSVCKKSYAREKTLKEHMRIHTNDRRYVCPVSECGQAFIQNCSLKSHIRSHHQDYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279554;
- 90% Identity
- -
- 80% Identity
- -