Ppur053961.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001665.1:19403482-19410760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.6e-05 0.0095 18.2 3.3 3 23 169 190 168 190 0.96 2 17 3.4e-05 0.0058 18.9 1.2 1 23 199 222 199 222 0.96 3 17 0.1 18 7.9 2.3 2 23 235 257 235 257 0.97 4 17 0.00038 0.065 15.6 1.4 1 23 266 289 266 289 0.97 5 17 0.095 16 8.0 2.7 1 23 300 323 300 324 0.97 6 17 1.4e-05 0.0024 20.1 0.4 2 23 351 373 350 373 0.96 7 17 0.00036 0.061 15.6 1.3 2 23 383 405 382 405 0.96 8 17 0.024 4.2 9.9 1.1 2 19 410 427 409 429 0.94 9 17 0.00095 0.16 14.3 0.6 2 21 435 454 434 457 0.94 10 17 0.46 78 5.9 0.9 2 23 466 488 466 488 0.91 11 17 0.00018 0.031 16.6 2.5 1 23 493 516 493 516 0.97 12 17 0.00091 0.16 14.4 0.3 2 23 527 549 526 549 0.92 13 17 0.025 4.2 9.9 0.6 1 23 573 595 573 595 0.97 14 17 3.9 6.6e+02 3.0 0.5 2 23 603 624 602 624 0.82 15 17 0.034 5.8 9.4 1.7 2 23 630 651 629 651 0.97 16 17 0.018 3.1 10.3 0.2 1 23 718 740 718 740 0.97 17 17 0.22 38 6.9 2.0 1 23 746 769 746 769 0.96
Sequence Information
- Coding Sequence
- atggaATTTGACACTGAACAAGATGGTTGGAAAGTGAAAAAAGATATAGAAACCAAGATTGAGCGACAAGACCCAACATCGTTCTTACCTGAAGAGCCAATGTCCTATGAAATTAagcagaaaaagaaaaaaaagaagaaaaagaaacaagAAGACCCGTTTAAGGATATTGAACTGGGACAACAGAATTATGTAAATGAACCATCCTTAGAATTAAACTTGGATCCAGAAGTTAATATAAAAGTTGAGAATATTGAAGTTAATTTGGATTTCAATGATTTTGGTAACAGCGATGGCCTCATAGTCGAGGGTGATCACAGCGAAAATATCCGAGAGCCAATAGTCAAACTCGAGGAAGAAAACAGAGAAGCCACATTACTCACTTTCGAGAGCGTCATCAATGACCACTCGATTCTAGGCATCACAGAAGACCAAAAAATTGAGCCCTCACAAGATAATACCGAGCTCATAACCCCCTCAGACGTTAATCCACCAGCAAACATGTGCCCAATCTGCCATCTAGTCTTCAAATCCAAAAAAACACTACGCATCCACCAGAAAAGAAAACACAAAGTGTACAGACAATCGTTCAAACATATCTGTGACAATTGTGGCATGTCATATGAGAATAAGAACAGCCTCATAGCGCATATGAAACGAAAACACGGCCCTAATTCAATTCCTGAAGACAAGGAAGATAGAACTTGTGAGCTGTGCGCATTAGTCTTCAAAGGGATGCACAGATTGAGAATGCATATGAGGAGGAAACATGGACTATTTAAAGACGCATTCAAACACGTTTGCAAAGTTTGTGGGCTGACGTACGATAAATACACCAGTCTAATAGTCCATATGCAACGCAAGCATACCCATTCAAAGCCAATTGAAAATAAACGATACAAATGCCCGTTCTGTGCAGTAATCTTCTTCAAAAGGGAGACATACGCTCGACACGTGCAAAGAAAGCACcatgccagtgaagaagaagctaaAACTAACGAATTATCTATCAAGTTGGAGGAAGGCAAGAACGAAAAAAGCGGTGAGGTATCTTGTAAGGAATGCCCACTAGTCTTTTCATCGCTTGGTTATTTGAAACTTCACATGAGAAGGAAGCATAATGCTTTGAAGGAAGATTTCAAGTTGAAGTGCAGTATTTGCAACTTGTCGTACAACAAAATTGAGAGCTTGAAACGGCATGTCAGAAGAAAACACGACCAGGGATCGTACTGTGATATTTGCAATAAGCAATTTGACACGCGAGAATCTTATCTGAATCATTCCCATCTTAATGATTACAAAGAATGCCCGCTATGCGGACTTATTTTCGCAACCCAAGGTGGTTTGAGCAAACATTTGAGATGTACTCACAAAATCGACTCGCCAAAAGTGGCTTATTGCAATATTTGCAACCAAGGATTCCATGATAAACGACTTATAAAACCTCACATTCTCAAAGTGCATTTACAAGTGTCGTACACTTGCAGATACTGCAAAAAAGTCTTCAAAGCCAGAGAAAGTTATAGAAGACATGTCATGATTAAACACCCGGATAAACAAATAGTAAAACAAAAGCAGGAATGTGAGCAGTGCTCGAAAATGTTTAGCGATGAATTTGAATTGAGCAAGCATGTAAGTGAAGCTCATGCAAAAAATGAGGGTTCAAGTTTTGATGAAACCGTGGTTAAGAAAGAAGATGCAGACGTGAAAAACAACTTTCAATGCACAAAATGTGATGATGTCTACCCAAGTTTCGAAACCCTGAAGATACATTTTGAAATGCACCGCAATGTTACAAATGAGACTCAATGTCAGATGTGTGGAGAAATGGTGCCCGGTCTTGAGTTACAAAAGCACATTAATAGTTTCCACAAGGAAGTAACAGTTCAGTGCAAATACTGTGAGTTTAATACTAATAACAAAACAAGTATGACACAGCATGTCCTAAGACACAAGAACGCTACAACGTTACATTGTGATGTCCCCGGTTGTAGGTACAAAAGTTACTATGAAGGTGCTATGTTGAAACATAAGCAAAAACATAAAGAATTGGGGTCTGTTAAGTTGCAATGTTCAAAATGCCCGTTCCAATCGatgaataaatacattttgaggTACCACGAAGAGGCACATGAAACGGGGAAGAAACGGTATTCATGTGATCAATGTGATTATGCAACGATTCTGCCAGCAAACTTGGTACAGCATAAATATAAGCATTCTACGGTGAAGAGGTTCAAATGTGAAGTTTGCCCGTTTGCAACTAAGTACAATACATCTTTGCGTTTTCACGTTAAAAAGAAACACTGTGATTTACCGAGTTTCAgttga
- Protein Sequence
- MEFDTEQDGWKVKKDIETKIERQDPTSFLPEEPMSYEIKQKKKKKKKKKQEDPFKDIELGQQNYVNEPSLELNLDPEVNIKVENIEVNLDFNDFGNSDGLIVEGDHSENIREPIVKLEEENREATLLTFESVINDHSILGITEDQKIEPSQDNTELITPSDVNPPANMCPICHLVFKSKKTLRIHQKRKHKVYRQSFKHICDNCGMSYENKNSLIAHMKRKHGPNSIPEDKEDRTCELCALVFKGMHRLRMHMRRKHGLFKDAFKHVCKVCGLTYDKYTSLIVHMQRKHTHSKPIENKRYKCPFCAVIFFKRETYARHVQRKHHASEEEAKTNELSIKLEEGKNEKSGEVSCKECPLVFSSLGYLKLHMRRKHNALKEDFKLKCSICNLSYNKIESLKRHVRRKHDQGSYCDICNKQFDTRESYLNHSHLNDYKECPLCGLIFATQGGLSKHLRCTHKIDSPKVAYCNICNQGFHDKRLIKPHILKVHLQVSYTCRYCKKVFKARESYRRHVMIKHPDKQIVKQKQECEQCSKMFSDEFELSKHVSEAHAKNEGSSFDETVVKKEDADVKNNFQCTKCDDVYPSFETLKIHFEMHRNVTNETQCQMCGEMVPGLELQKHINSFHKEVTVQCKYCEFNTNNKTSMTQHVLRHKNATTLHCDVPGCRYKSYYEGAMLKHKQKHKELGSVKLQCSKCPFQSMNKYILRYHEEAHETGKKRYSCDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279551;
- 90% Identity
- -
- 80% Identity
- -