Ppur062242.2
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001672.1:9407172-9409804[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.058 9.8 8.7 0.3 1 23 44 67 44 67 0.92 2 19 1.2 2e+02 4.6 1.6 3 23 97 118 96 118 0.96 3 19 0.064 11 8.6 0.6 3 23 142 162 140 162 0.96 4 19 0.0087 1.5 11.3 0.3 1 23 166 188 166 188 0.96 5 19 0.0053 0.9 12.0 0.2 1 23 193 216 193 216 0.96 6 19 0.00055 0.094 15.1 2.9 1 23 222 245 222 245 0.96 7 19 8e-05 0.014 17.7 0.2 1 23 252 275 252 275 0.97 8 19 1.6e-05 0.0028 19.9 0.3 1 23 281 303 281 303 0.97 9 19 3.1e-07 5.3e-05 25.3 1.2 1 23 309 331 309 331 0.99 10 19 0.3 51 6.5 2.6 1 13 337 349 337 350 0.91 11 19 0.9 1.5e+02 5.0 0.1 1 23 473 496 473 496 0.89 12 19 9.9 1.7e+03 1.7 0.1 2 23 521 543 520 543 0.84 13 19 0.11 20 7.8 0.1 1 23 569 591 569 591 0.96 14 19 0.00065 0.11 14.8 0.2 1 23 595 617 595 617 0.98 15 19 0.00011 0.019 17.2 0.7 1 23 622 645 622 645 0.96 16 19 0.0074 1.3 11.5 0.4 2 23 652 674 652 674 0.93 17 19 0.013 2.2 10.7 5.5 1 23 681 704 681 704 0.96 18 19 9.8e-05 0.017 17.4 4.9 2 23 711 732 710 732 0.96 19 19 3.4e-05 0.0058 18.9 0.6 1 23 738 760 738 760 0.99
Sequence Information
- Coding Sequence
- ATGCCATCCAAATACATAGGAAGCACTGAAGTGAAGGATTTAAACGACCAAGTGAAAGCTAGAAAGAAACAAGCTACAATAATTCTAGAGTTTTCTAAGATATGTCCTTTCAAATGGTCAAAGAACCTGTATAATTGTTTCTACTGTGAACAACTATTTGGCGACCCAGACAAACTTAGAGAACATAACATTATTAACCATAACTctttaaaatcatcaaacataaAAGAAGCTATTgccaaacttaaaaaatatgaactgATAAAAGTAGACATCACAAATGTATTCTGTAAGATATGTGATGATCACATTAACAATTTGACTGAGCTTAAGTCTCATTTGCTGATGAAACACAAAAAGGCAATTGATTTGAAGTCCAGTGATGGTCTTCTGCCATTCAAACTCACTATGGAAGACTTCGGTTGCGCTGTTTGCTCTAGTAAATTTACCGAATTTAAGTCTTTAAACCAACACATGAATGCACATTTCCAAAATTTCATTTGTGAGCAATGTGGATCCGGATTTATCACTCCGGAAAGACTAAGAACACACTCTTTCACCCATGAGAGTGGGTCCTTTCCATGTGTGGGCTGCGACAAAATCTTCAAGTCGACATATGCAAAGAATGAACACTACGCAACCGTTCACATGCAAGTCAAAAGGCACAGATGCCCACAATGTCCCGAGTCGTTCCGCAATTACTTTCAgagaaataaacatattaaaaacgTACACGGATTGAAGTTAAAGGAATTCAAATGCACAATGTGCCCTAAAGTCTTCACGGTCAGTGGGAAATTAGGAGTTCACGTGAGGAATGTACATTTAAAAGTTAAGAGATATGCGTGTGATGTCTGCGAGTGGAAGTTTTACTCGAAATCGGAGTTGAAAGAGCACATGGTACGACATGGAGGAGAGAGGAAGTATCAGTGCAATGTATGCAAAAAGGCGTATGCTAGAAAATACACGTTGAGGGAACACATGCGGATTCACGATAACGACAGAAGATTCGTCTGCACTACATGCGGACGATCGTTCGTCCAAAATTGCAGAACCGACCAGACAATATTAACGGCGGGCGTTAAGAAGCAGAAACGCATCGTGCCGCTCTTTCAAGTCGCATATGATCGCAGCTTATGTAGGCCTCTGGGGACCATAGCGGACTTCAGTAAACTCAAATCGCGAAAGCAAATCTCGAACATAAGAATCTCCACCACCAACACGAAATCATTCACTCCATCGCGCAGTCCGTCGCCTATTTCTATCGGAGGCAGATCGCCCTCACCAACCCAATATGTCGCGCCTTCTAAAATCAAGCAAACGGCAACCAAGCCAAGGCACCCTGATGTCAGACAAAACGCTCTAACCCTCTTCGAATTCTCAACCGTCTACCCATTTATTTACGGCAACAACAAGTTCAAATGCTTCGTCTGCTCGCAACCCTTTTTAGAAACAGCAATGTTAAGAGTTCATATGGGCGAGGTACACACATTCGCGCCGCTAAAACGGCTGCTTAATAACAGACGGGAGAACGTTGTGAAAGTAGACGTGACGGACATTACTTGCAAAATATGCTCAGCGAAACCCAACGGACTCGCTGAGTTGAAAATACATCTTAAAGAAGTACACCAAAAACCGATAGACCCTGATTTAAATGATAACATCATACCGTTCAAACTTGAAAACGTCGACGGTGCACCTGGTTATAAGTGCGTTATGTGTGACcagaattttattaaagttcGCATTTTGGTGATACACATGAGCGTTCATTTCAATAACTACAGCTGTGAGGTTTGTGGGTCAGGGTTCATGACTTTGCGTTTGTTGAAGAAGCATTTGGAAGTTCACGAAGGTGGAAACTATCCTTGCGATCGCTGCAACAAATCTTTCAGCACCGCTTATAAAAGGACTCTTCATATTAGAGGGGTGCACATGAAGCAGTGTCCCCGTAGATGTCCGATGTGTCCTGAAAGGTTCAACTCGAACTACAAGAGGACGATTCATCTCCAGGACGTACATAACCAGTCGACTCGTGTTCACAAATGTGAGATTTGTGGTAGGGGGTTCAATTTGAAGTATCACCTGATATGCCACACTCGTTCTGTGCATCTTCAAGAGAGGAATCAGCAGTGTGACGTCTGCCACCAGAGGTTCTGCAACAAGGAGACGTTGAAGAGGCACATGGTCATCCACACAGGGGAAAAGAATTATAAATGTGACGTGTGTGGCATGGCTTTCTTAAGGAGGAAGAACCTAAAAGATCATCTCCGACTTCATGGCATAGGGTGA
- Protein Sequence
- MPSKYIGSTEVKDLNDQVKARKKQATIILEFSKICPFKWSKNLYNCFYCEQLFGDPDKLREHNIINHNSLKSSNIKEAIAKLKKYELIKVDITNVFCKICDDHINNLTELKSHLLMKHKKAIDLKSSDGLLPFKLTMEDFGCAVCSSKFTEFKSLNQHMNAHFQNFICEQCGSGFITPERLRTHSFTHESGSFPCVGCDKIFKSTYAKNEHYATVHMQVKRHRCPQCPESFRNYFQRNKHIKNVHGLKLKEFKCTMCPKVFTVSGKLGVHVRNVHLKVKRYACDVCEWKFYSKSELKEHMVRHGGERKYQCNVCKKAYARKYTLREHMRIHDNDRRFVCTTCGRSFVQNCRTDQTILTAGVKKQKRIVPLFQVAYDRSLCRPLGTIADFSKLKSRKQISNIRISTTNTKSFTPSRSPSPISIGGRSPSPTQYVAPSKIKQTATKPRHPDVRQNALTLFEFSTVYPFIYGNNKFKCFVCSQPFLETAMLRVHMGEVHTFAPLKRLLNNRRENVVKVDVTDITCKICSAKPNGLAELKIHLKEVHQKPIDPDLNDNIIPFKLENVDGAPGYKCVMCDQNFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHEGGNYPCDRCNKSFSTAYKRTLHIRGVHMKQCPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCEICGRGFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNYKCDVCGMAFLRRKNLKDHLRLHGIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -