Ppur011856.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001644.1:8382453-8388511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.016 2.7 10.5 1.3 2 23 140 161 139 161 0.93 2 20 0.0037 0.62 12.5 0.8 1 19 180 198 180 202 0.94 3 20 4 6.8e+02 2.9 0.0 6 23 211 229 210 229 0.94 4 20 3.8e-05 0.0064 18.7 0.8 1 23 304 326 304 326 0.98 5 20 8.8e-06 0.0015 20.7 0.8 1 23 332 354 332 354 0.98 6 20 1.6e-05 0.0027 19.9 1.5 1 23 360 382 360 382 0.97 7 20 1.1e-05 0.0018 20.5 0.5 1 23 388 410 388 410 0.99 8 20 4.2e-05 0.0072 18.6 1.6 1 23 416 438 416 438 0.98 9 20 3.1e-06 0.00053 22.1 1.7 1 23 444 467 444 467 0.96 10 20 0.0002 0.035 16.4 1.5 1 23 473 495 473 495 0.97 11 20 3.2e-05 0.0055 18.9 0.6 1 23 501 524 501 524 0.95 12 20 0.00028 0.047 16.0 0.4 2 23 531 553 531 553 0.93 13 20 0.012 2.1 10.8 0.3 1 21 559 579 559 582 0.89 14 20 0.046 7.9 9.0 0.4 2 21 586 605 585 606 0.92 15 20 0.0041 0.7 12.3 1.4 6 23 613 630 608 630 0.93 16 20 5.7e-05 0.0097 18.2 3.6 1 23 636 659 636 659 0.94 17 20 4.4e-05 0.0075 18.5 1.5 1 23 665 687 665 687 0.98 18 20 0.017 2.8 10.4 0.4 2 20 693 711 692 713 0.93 19 20 0.002 0.34 13.3 4.5 1 23 720 742 720 742 0.97 20 20 0.086 15 8.2 9.5 1 23 747 770 747 770 0.97
Sequence Information
- Coding Sequence
- ATGGTTCCTCATAGTAGTGATGGAAAAAGTCAAGAAGGCTCTAAGCAAGTTTTTGTAAGTGAGACCAAACCTGAAGATCCCATCACAGAGGTCATGGAACCTCTCAGTAATGGTTATGAGATAAAAACACATGATGCATCAGAAACCAAATTATCCATGGGTACAGATAATGCAATTGGAACTATAGCTGATGTATCTACACCAAagGTAACCACAACGCCAAAAGATTATGATGAAATATCTGTAAGCAATACAGATTTTAACATGAAAGAAGACACAACAGAAGAAATTTTTGAAGTGGCAAAAGAAACAGCTAGTGAAAAAGGCGAAATCGAAGGCGATACAGACAACAGTGCCGATGTAAAGCTTGAGCACATGATGTCACTGAAAGTTGTCTTGGAGCGAGCCAAATTCATAAGCTGTCGTAACTGCAATTTAGTGTTCTTCAGACAAAAAGACCTAAAACTTCACTCTGTCAAACATTTACTCCCTTcAAACCAGTACAGCGACGAAGAAAGCACAAGATTCGTGAAGCGGTTCCATTGCGAAAAGTGTGATCTTCGTTTCGTCCTATGGAGCACCCTCCAGGCTCACAAGCCGTTGCACGAACCCTACCCGCACGTGTGCGCCTGCGGAGTCGGGTTCCACCTCGCCGCAGACCTCGCCGCTCACAGGAGACTCGTCCACCTGGACGAGATAAAACAGCAGCTGACACAACTCACCGACCGCAAGCAGAGAGTGCTCAAACACCAAATATGGGAACCGAACCTATTCAGAAACGCACCGAACGTTGCAAAACGACCGAGGCGAACGCCGAAAGTCAATATAGAACCGAAAAGAAGAACACCGGCGATCGAGCGGTACACGTGCGATGAGATGCAGCTGATCGCGAGAAACGACGATGGAACGTTCTCCTGCCCGATCTGCCACAAGAGATACAAGTCGAAGGCCGGCGTGCAGGTGCACCTAGCCACGCACGCGTCGGTCAAGCCGTACCGCTGCGACGAATGCGGTGTCCGCTTCACGCAACGAGGCGCGCTCAAAACGCACAAGAAACTGCACACCGGCGTCAAGGAGTTCGCGTGCGGCTTCTGCGGGAAAGAGTTCTCCACGTACCACAACATGCTGAACCACATACGGATTCACACCGGCGTGAAGCCGTTCAAGTGCGATTTCTGCCCGATGGCGTTCAGCGATCCGTCGGCGCGCAAGCGGCACGTACGCACGCATACCGGAGAAAGACCCTACGCCTGCCAATACTGCGACAAGACCTTCAGCGACGCCAGCCAACACATTGTCCACTTGCGTCGACACACAGGCAACAGAAAATTCCCATGCCCGCGATGCCGGAAATCGTTCTACACGAAATCCGATCTGAAGAAGCACACCGACACGGTGCACGGCAACAGGAAGGACCACGTCTGCAGGGTATGCGACAAATCGTTCGCCTTGAAACAGTACCTGTACATACACATGAAATGGCACGAGAGCGACGAGAAATTCGAGTGCGACTACTGCAGCCGGCGGTTCCGTTCCAAACAGGCGTTGATGAATCACATAGGTTCCGTGCATCTGCAGGTGAAGCGAGCGGTGTGTCCCGACTGCGGCATGAAGTTTTTCAGCAACGACCGGCTCAAAAAGCATTACATTCAAGTCCACGAACGCCCGCTCGCGTATCAGTGCGACTATTGTGGAAAGAGAGAATCCCTGAAATCGCTTCTTGTAAAACATGTTGTCGCGAAACATTCGAATGTCAGCTGCGAGCGGTGCCGCAGGAGATTCGCCAACGGCGCGGACTTGAGAAAACATTCCAAAAGGGGTTGCCTGAGATGTAGCTGCGGGAAATATTTTAAGAGCCCCAAAGACCTGATCTCTCACCAAGTGACGCATGACCCCACGCAGCCCTACCTGTGCAGCTTCTGTGACAAAAGATTTAAAACCGAATCCTATTTGCGGAAGCACTACATGAATAAACACACGAATACTGAGCTGTTCGAGTGCGATGAATGTGGCAAGAAATACTCCAATCGCCATCAAATAGTATCTCATCTCAAAATACATTGTAAGCTACGCGTGTATTGCCACCTCTGCCGACAAGTATTCTTTTCCGAGGCTAATTTGGAGAATCATAAAGCCAAGAAACTGTGTTTGAAAACGCATAAATGCGATTCTTGCGGTAAAATATGTAGTTCTCGGAACAATTTGCTTTACCACTTGAAGGAGCATGAGGCATGGGAATTTCATTGCGCCCATTGCCCCAAAAGATGTAAAAGGAAGGCTGCGATGTCAAATCACATCAAACGATGCCATAAACATTTATTCCGAAGTAAACCACGGCATTCCAAATGA
- Protein Sequence
- MVPHSSDGKSQEGSKQVFVSETKPEDPITEVMEPLSNGYEIKTHDASETKLSMGTDNAIGTIADVSTPKVTTTPKDYDEISVSNTDFNMKEDTTEEIFEVAKETASEKGEIEGDTDNSADVKLEHMMSLKVVLERAKFISCRNCNLVFFRQKDLKLHSVKHLLPSNQYSDEESTRFVKRFHCEKCDLRFVLWSTLQAHKPLHEPYPHVCACGVGFHLAADLAAHRRLVHLDEIKQQLTQLTDRKQRVLKHQIWEPNLFRNAPNVAKRPRRTPKVNIEPKRRTPAIERYTCDEMQLIARNDDGTFSCPICHKRYKSKAGVQVHLATHASVKPYRCDECGVRFTQRGALKTHKKLHTGVKEFACGFCGKEFSTYHNMLNHIRIHTGVKPFKCDFCPMAFSDPSARKRHVRTHTGERPYACQYCDKTFSDASQHIVHLRRHTGNRKFPCPRCRKSFYTKSDLKKHTDTVHGNRKDHVCRVCDKSFALKQYLYIHMKWHESDEKFECDYCSRRFRSKQALMNHIGSVHLQVKRAVCPDCGMKFFSNDRLKKHYIQVHERPLAYQCDYCGKRESLKSLLVKHVVAKHSNVSCERCRRRFANGADLRKHSKRGCLRCSCGKYFKSPKDLISHQVTHDPTQPYLCSFCDKRFKTESYLRKHYMNKHTNTELFECDECGKKYSNRHQIVSHLKIHCKLRVYCHLCRQVFFSEANLENHKAKKLCLKTHKCDSCGKICSSRNNLLYHLKEHEAWEFHCAHCPKRCKRKAAMSNHIKRCHKHLFRSKPRHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279510;
- 90% Identity
- -
- 80% Identity
- -