Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_963924145.1
Location
OZ001662.1:11348369-11387050[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.8e-15 3.4e-11 45.0 0.1 3 44 597 638 595 640 0.95

Sequence Information

Coding Sequence
atgactaCTATAGGCCCCAAAAAAGACGGCGGGCCTAATGTGGAATATTTCCAATCGCCGGAATCGCTATCTCAATTCGACCAAATTCGTGTTTGGCTGCAGAAAAATTGCAAAAAGCATGTCCAAACTGACCCGCCAACGAAGGAGGGCTTGGCGCAGCTGGTCATCCAGCTCATCCAATACCAAGAGAACAAGCTAGGAAAGAATGCATCTGATCCACCTTTCTTGCGACTTCCTATGAAAGTGTTTATGGACATGAAACCGGGCGGATCTCTATGCACAGTGCTCGCCACCATGTTCCGTTTCAAGTCGGAGCAGCGGTGGCGCAAGTTTGACTTCCAGGTCGGTAAGAACCCGTCCCGCAAAGATCTCAACGTGCAAATGATGATGGAGATAGAATCGTCTCTAGTGGCTGCTGAAGTGATCCGCACTCCCTGCGTGTATATACGCCCTGATGTGGACAAAGCTACTGCTAATAAAGTGAAGGATATTGTGAGCCATCACCAGGGAGATATTTGCGAAGATGAAGAGGACGCGACGCACATCATCTACCCTACAGTAGACCCCTTAGAAGAGGAATATGCTAGACCGGTGTTCCGCCGCGGAAACCACTCCTTAGTGCACTGGTACTACCTGCCCGACAGCCACGACACGTGGGCGCAGGCCGACTTGCCGGTCGACATTCCTGAAACTGTGAACTGGGACTGCAACCGGTCGGAACCGTGGCGCGTATCTGCGTCATGGGTGCTCGACTTGCCGCAGTACAACGAGTGGATGAACGAAGAAGACTACGAGGTCGACGTCAACGGCAAGAAGAAGGTGCACAAACTCCGTCTGTCAGTCGACGACCTGATTCCGGGCGCGGAGCCGTCCAGCAAAGGCAAAAAGGGCAGCAAGAGAAAGCGCTCGCCCTCCCCCCCGCCTCAGAAGCACGGCAAGAGGAAGAGCCGTATTACAAAGCGTCGAGAAAATGATGCTGATGACGAAGAAGACAATGCGTCCAGAGACAATACAGATGCGGTACCTACTCCTGAGAACGACCGCTCCACAGACACGCCCGCAGCGGCGGCCGAGCCCGTAGCGCCGGCGGCCGAGGCGCCGGCCACGCCCGCGCCGCTCGACGCGCACGACGACTCGCAGGGCAAGCACTCCGACTCCAACACGCAGGACATGATCGTGAAAGAAGAGTTGGAAGACAACGTGACTGACCAGACGCACCACATCGTGGTCCCGTCTTACTCTGCGTGGTTCGACTACAACTCGATACACACGATCGAGAAGCGGGCACTGCCCGAGTTCTTCAACGGGAAGAACAAGTCCAAGACGCCGGAGATATACCTCGCTTACAGAAACTTCATGATCGACACGTATCGCCTGAACCCGACGGAGTACCTGACGAGTACAGCGTGCAGACGCAATCTGGCCGGAGACGTGTGCGCTATTATGCGCGTTCACGGCTTCCTCGAGCAGTGGGGCCTTGTCAACTACCAGATCGAAGCCGAGTCCCGGCCGACGGCTATGGGCCCGCCGCCGACGTCGCACTTCCACGTGCTGTCGGACACGCCGTCCGGGCTGCAGCCGCTCGTCGCGCGCCCGCCGCAGCCCCGCCCTGCGGAGAATGCAGCAGTGCCGAAAGTGGAGGCCGGCTTGCCGAACGGCACGGAGGCCGGCGCAGGGGCCGTACCGGCCGGCGGGCCGCCCGCGCCCGTCAAGCCCGAGCCCGGCATCGAGATCGGCACGATGCCCGGCCTCAAACTCGATCAGTACCGCGGAGGCGCGCGCGGCCGCGAGTGGACCGACCAGGAGACGCTGCTGCTGCTCGAGGCGCTGGAGCTGCACCGCGACGACTGGAACCGCGTCGCCGCGCACGTGGGCACGCGCACGCAGGACGAGTGCATCCTGCACTTCCTGCGGCTGCCCATCGAGGACCCCTACCTGAGCGACGCCTCCTCCGGTGGCGTGTTAGGCCCACTGGCGTACCAACCTATTCCCTTCAGCAAGATTGGCAATCCGGTGATGAGTACAGTCGCTTTCTTGGCGTCTGTCGTCGACCCCCGCATTGCGTCTAAGGCCACCAGAGCGGCTATGGACGAGTTCGCCGCTATCAAGGACGAGGTCCCCGCGGCGATGATGGAGGCGCACGTGAAGGCGGCtggcgcggcgggcgcgggcgcggcgctgGCGGCCACCGGCATCGCCGGCACGCAGCCCGAGCCCGACGCGCCCGCGCAGTCCGCCGCTACGCCCGCAGCCGCGACCGCGCAGCCCGCCGCCGGCGAAAAGAAAGAAGGCGCCAGCGAAGTCAAGAGCGAGCCAATGGAGGTGGAGGAGGGCGAGGCGAAGGTTAAAGAAGAAGCTCCGGACACTCCAGCCACTGACGAGAAAGATAAGGACGCCGCGGACGCACAACCTGACGCACCAACAACAGTAGACGCAAAGCTCCAGTCAGCGGCGGCAGCAGCGCTCGCAGCGGCCGCTGTGAAAGCCAAACATTTAGCCGGCGTCGAAGAGAGGAAGATCAAGTCGCTGGTAGCTTTGCTGGTGGAGACCCAGATGAAGAAACTCGAGATCAAGCTGAGGCACTTTGAAGAGCTTGAGGCTACCATGGAGAGGGAGAGAGAAGGCCTGGAGTACCAACGGCAGCAGCTGATCCAGGAGCGACAACAGTTCCACCTGGAACAGCTGAAGGCCGCGGAGTTCCGCGCTCGACACCAGGCGCACCAGAGGCTGCAGGCGGAGACAGGCGCCGCGCCCGCCGGGCCCGACCAGCCGCCGCCCGACGCGCCGCCGCCCCAGCCGCACCACGCGTAG
Protein Sequence
MTTIGPKKDGGPNVEYFQSPESLSQFDQIRVWLQKNCKKHVQTDPPTKEGLAQLVIQLIQYQENKLGKNASDPPFLRLPMKVFMDMKPGGSLCTVLATMFRFKSEQRWRKFDFQVGKNPSRKDLNVQMMMEIESSLVAAEVIRTPCVYIRPDVDKATANKVKDIVSHHQGDICEDEEDATHIIYPTVDPLEEEYARPVFRRGNHSLVHWYYLPDSHDTWAQADLPVDIPETVNWDCNRSEPWRVSASWVLDLPQYNEWMNEEDYEVDVNGKKKVHKLRLSVDDLIPGAEPSSKGKKGSKRKRSPSPPPQKHGKRKSRITKRRENDADDEEDNASRDNTDAVPTPENDRSTDTPAAAAEPVAPAAEAPATPAPLDAHDDSQGKHSDSNTQDMIVKEELEDNVTDQTHHIVVPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHGFLEQWGLVNYQIEAESRPTAMGPPPTSHFHVLSDTPSGLQPLVARPPQPRPAENAAVPKVEAGLPNGTEAGAGAVPAGGPPAPVKPEPGIEIGTMPGLKLDQYRGGARGREWTDQETLLLLEALELHRDDWNRVAAHVGTRTQDECILHFLRLPIEDPYLSDASSGGVLGPLAYQPIPFSKIGNPVMSTVAFLASVVDPRIASKATRAAMDEFAAIKDEVPAAMMEAHVKAAGAAGAGAALAATGIAGTQPEPDAPAQSAATPAAATAQPAAGEKKEGASEVKSEPMEVEEGEAKVKEEAPDTPATDEKDKDAADAQPDAPTTVDAKLQSAAAAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARHQAHQRLQAETGAAPAGPDQPPPDAPPPQPHHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00040769;
90% Identity
iTF_01281293;
80% Identity
-