Pnig013476.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438946.1:3958365-3966369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1 1e+02 4.6 0.1 3 23 117 137 115 137 0.94 2 13 0.029 2.6 9.6 0.2 2 23 141 163 140 163 0.89 3 13 9.6 8.7e+02 1.7 8.1 1 23 367 390 367 390 0.96 4 13 0.052 4.7 8.8 0.1 1 20 398 417 398 419 0.95 5 13 0.0031 0.28 12.6 1.4 3 23 430 450 429 450 0.98 6 13 0.42 38 5.9 0.6 1 23 466 489 466 489 0.91 7 13 0.0036 0.32 12.5 1.5 1 23 498 521 498 521 0.94 8 13 9 8.1e+02 1.8 0.4 8 23 571 587 570 587 0.88 9 13 0.14 13 7.5 0.2 2 23 598 620 597 620 0.81 10 13 1.7e-05 0.0016 19.7 0.9 1 23 654 676 654 676 0.98 11 13 7.4e-06 0.00067 20.9 1.4 1 23 683 705 683 705 0.98 12 13 7.1e-05 0.0064 17.8 2.3 1 23 710 732 710 732 0.96 13 13 0.037 3.3 9.3 2.4 1 19 738 756 738 758 0.86
Sequence Information
- Coding Sequence
- ATGTCTTCAGACGAATCTGATGATGAACCGTTATCGGTGTTAGCGGCTTCTAAAAGGTTGCATCCTGAGAATTTCGAAGGCCTAGAAGAAACTACAATTGAAGTGGTTTCTACagcaaaaaagaagaaaaagaagtacCAGCCGAACGATAATGTTTCTATTACAATCAAATTGCGTCAACCAACGGACGTACGTGGACCTAAGGTGGTTAAAAGACCTTCGGATGTGTGGATGTACATCAAAGATTTGAATCTTACTGGGCCATACAGCTGCCTACTTTGCTCTGAGTGGTTCATAAACAGGTCTAAAATCATCTTCCACTATGTGCTAAAtcataaaaaagatttttgtgGGATCTGCAGATATTTTGTAACTGACAGAGATGCCTGGGTAGCTCATGCAAAGTTTCATGTACCTTGGACATGCTCACAATGTTCTCAAAGCTTTCCCACGGAACCTGACTGGAGAAAGCACTTCAGTGCCGCCCACAACCTGGTCCACTGCCGTCTCTGTCACTTCCGAACCACTGATGATGATCAATACAACATGCATTTAGTTGAAAAGCACAATGTAACAAACATAGCCAGCAAAGACGCAGAAAGCATTTGGGAGGTACAATATGAGTTCAGCCCAAATTTTCAGTGTTTGCTGTGCTCTAAAAGAAACTTACTGTCTACCTCATTCTTCAACCACTATATGGGCTATCATCATTTTACTCTAAAGTCTATCACAAACATAATATCTGGCACAGATCCACCTTTCAAAGTAAATGGTGCTAATGTAGGCACTGAAATAGTAAGTGACCAGTTCAAAACTGGATACCAAGGGCTTGGAACTAAAGAGTTTGAAGATGATTTAGTTGTGAAGCAGGAAGTCTCAAGTGATACAGAAAATAATGATGAAAAAGATAACCCAGATGGTGCTGTGGATTCTTATAAAGGGATTGAAGATTTTGATGTCACTTTAATGGAGCTGATTGTGATTCAAAAGTGTTACTTTGACTATGTAAATTATACACTAAATCAAATTAATTCCAACACAGTTCCTGAGGATTCCAGCATAGACTACAAGGGTGCCAATCGGGATATTGAAATGGACTTTGAATGCTATCTATGCAAGACATGTTTTACTTCAGTGCATATATTTGTAACACACATGTGTAAGATGCATTCAGTTAAATATATACCACTCTATTCATGTAGAATGTGTGCTAACACATTTGAAAGTAATAAAGAGCTTGAAAATCATGTGCTGGAGGAAATGGGAGAGTTTGAAGACCTGTGGCTGTGCCAGTTTTGTGACAAAGAGTTTGATAGCAGAGAGGAAACTAGAAAGCATTTGAACTCTCATTGGGATGTTATGGTGTATGACAACTGTTTCAGTCCACACTTGGGCTTCAAATGCAAGTACTGTCCAACACTCTTTTGGAATGAGACAGATAGAGAGACCCATCAGATCAGAGCCCACTTCAACAAGCATGCTGGAGATTTTTATAAGTGTGAAAGTTGTTCAGAAGTATTTAGCGATAAgATTTGGTTCATCCACCACTACATTCAGAGGCATCAAGTGGAGCGTGAGGACATATGTTTCCTTTTCAAATGCTCTGTATGTTGTTTAGTGTTGCATACAGTTTTAGAAATGAGGGCACATTTTTTCGAGTACCATAAGGAATCCAAGAAGATATTTTGTGCTTTAGGTTCATGTGTATACAAGGCACTGTGTTCGAGGAAGTCGTTCAAATTGCATTTGAAGACGATCCACGGGTCTACAACCCCTAAGCGGGCGGTGGACCGCTGCAACATCTGCGGCCGCGAATTCGGCAGCGCTCGCGCTTGCGGCGCGCACATGGCGCAGGCGCACGGCGCGCGCAACTACAAGTGCAAGCTGTGCTGCGAGGTGCTGCACACCATCGATGAGAGAAAGCTCCACTACCTGATGCGGCACCCAGGGAGGCACCCTTACGAGTGCGCGGAGTGCGGCAAGTCCTTCCAGTACAAATCCTCGCTGTACATGCACAAGCAGGTGCACGCGACTAATAAGCCGACTTTTACTTGCACGTACTGTGGGAAAGTGTTTATGAAAAAAGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGTCCGCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGCCACACCGGCGAGCGGCCCTACGCCTGCCAGCACTGCCCGCGCACCTTCTCCGACAAGGGAGCTTGCACCTCGCACTCCAGGTAA
- Protein Sequence
- MSSDESDDEPLSVLAASKRLHPENFEGLEETTIEVVSTAKKKKKKYQPNDNVSITIKLRQPTDVRGPKVVKRPSDVWMYIKDLNLTGPYSCLLCSEWFINRSKIIFHYVLNHKKDFCGICRYFVTDRDAWVAHAKFHVPWTCSQCSQSFPTEPDWRKHFSAAHNLVHCRLCHFRTTDDDQYNMHLVEKHNVTNIASKDAESIWEVQYEFSPNFQCLLCSKRNLLSTSFFNHYMGYHHFTLKSITNIISGTDPPFKVNGANVGTEIVSDQFKTGYQGLGTKEFEDDLVVKQEVSSDTENNDEKDNPDGAVDSYKGIEDFDVTLMELIVIQKCYFDYVNYTLNQINSNTVPEDSSIDYKGANRDIEMDFECYLCKTCFTSVHIFVTHMCKMHSVKYIPLYSCRMCANTFESNKELENHVLEEMGEFEDLWLCQFCDKEFDSREETRKHLNSHWDVMVYDNCFSPHLGFKCKYCPTLFWNETDRETHQIRAHFNKHAGDFYKCESCSEVFSDKIWFIHHYIQRHQVEREDICFLFKCSVCCLVLHTVLEMRAHFFEYHKESKKIFCALGSCVYKALCSRKSFKLHLKTIHGSTTPKRAVDRCNICGREFGSARACGAHMAQAHGARNYKCKLCCEVLHTIDERKLHYLMRHPGRHPYECAECGKSFQYKSSLYMHKQVHATNKPTFTCTYCGKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFSDKGACTSHSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -